Projects in Awesome Lists by barricklab
A curated list of projects in awesome lists by barricklab .
https://github.com/barricklab/breseq
breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
Last synced: 03 Apr 2026
https://github.com/barricklab/ostir
Software for predicting translation initiation rates in bacteria
bioengineering rna-structure synthetic-biology
Last synced: 03 Apr 2026
https://github.com/barricklab/mutant-protein-stability
Modeling the effects of mutations in proteins using PyRosetta
Last synced: 03 Apr 2026
https://github.com/barricklab/barricklab
General data analysis spreadsheets and scripts
Last synced: 03 Apr 2026
https://github.com/barricklab/seabreeze
seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies
bioinformatics-pipeline experimental-evolution long-read-sequencing structural-variation
Last synced: 03 Apr 2026
https://github.com/barricklab/brefito
Snakemake pipelines for analyzing resequenced bacterial genomes
Last synced: 03 Apr 2026
https://github.com/barricklab/efm-calculator
Evolutionary Failure Mode Calculator
Last synced: 03 Apr 2026
https://github.com/barricklab/brnaseq
Basic analysis of bacterial RNAseq data for differential gene expression
Last synced: 03 Apr 2026
https://github.com/barricklab/cryptkeeper
Tool for visualizing unintentional bacterial gene expression from a DNA sequence
Last synced: 03 Apr 2026
https://github.com/barricklab/madcap-seq
Scripts to analyze multiplex adaptome sequencing data
bioinformatics evolution genomics
Last synced: 03 Apr 2026
https://github.com/barricklab/efm-calculator-2
Evolutionary Failure Mode Calculator v2
Last synced: 03 Apr 2026
https://github.com/barricklab/igem2019
Scripts and datasets for measuring BioBrick plasmid burden.
Last synced: 03 Apr 2026
https://github.com/barricklab/igem2020
University of Texas at Austin 2020 iGEM Team
Last synced: 03 Apr 2026
https://github.com/barricklab/fitnessr
R package for calculating relative fitness from co-culture competition assays
Last synced: 03 Apr 2026
https://github.com/barricklab/btk
Broad-host-range Toolkit (BTK) for genetic engineering of non-model bacterial species
Last synced: 03 Apr 2026
https://github.com/barricklab/widespread-recurrent-part-variants
Analysis code for identifying genetic part variants in engineered plasmids
Last synced: 03 Apr 2026
https://github.com/barricklab/breseq-ext-cnv
breseq copy number variation extension
Last synced: 01 Apr 2026
https://github.com/barricklab/conda
Pre-release conda channel for breseq, auto-built from barricklab/breseq master
Last synced: 13 Jul 2026
https://github.com/barricklab/abaylyi-ee
Acinetobacter baylyi ADP1 evolution and engineering
Last synced: 03 Apr 2026
https://github.com/barricklab/ltee-leaderboard
Shiny tool for viewing the transfer history of the E. coli Long-Term Evolution Experiment
Last synced: 03 Apr 2026
https://github.com/barricklab/nd-bartonella-ee
Code for analyzing mutations that evolved in Bartonella bacteria passaged through rodents in the laboratory.
Last synced: 03 Apr 2026
https://github.com/barricklab/fugues
Protocols for Functional Genomics using Engineered Symbionts (FUGUES)
Last synced: 03 Apr 2026
https://github.com/barricklab/breseq-ext-paired-end
breseq extension for calling mutations from paired end read mapping
Last synced: 03 Apr 2026
https://github.com/barricklab/efm-analysis
Code for analyzing sequencing data from Freshman Research Initiative genetic failure mode experiments
Last synced: 03 Apr 2026
https://github.com/barricklab/bpopsim
Simulator of evolutionary dynamics in asexual populations. Tools for creating Muller plots to visualize these dynamics.
Last synced: 03 Apr 2026
https://github.com/barricklab/breseq-ext-specificity
breseq extension for analyzing the specificity of genome evolution in samples from different treatments
Last synced: 03 Apr 2026
https://github.com/barricklab/barricklab_calendar
Google Calendar to Slack Daily Events
Last synced: 03 Apr 2026
https://github.com/barricklab/plasmrs
Plasmid mutation rate and segregation simulators
Last synced: 03 Apr 2026