Projects in Awesome Lists by cmdcolin
A curated list of projects in awesome lists by cmdcolin .
https://cmdcolin.github.io/awesome-genome-visualization/?latest=true
A list of interesting genome browser and genome visualization programs
genome-browsers genomic-visualizations
Last synced: 06 May 2025
https://github.com/cmdcolin/oddgenes
A small database of weird gene annotations
Last synced: 04 Apr 2025
https://github.com/cmdcolin/mafviewer
A JBrowse plugin to view multiple alignment format (MAF) files
Last synced: 12 Apr 2025
https://github.com/cmdcolin/nextjs-appdir-blog
A basic setup for creating a static site/blog using the nextjs "app" directory
Last synced: 18 Aug 2025
https://github.com/cmdcolin/technical_oddities
A compilation of short descriptions of tech oddities that are weird, debunked or not
Last synced: 04 Mar 2025
https://github.com/cmdcolin/jbrowse-plugin-mafviewer
A viewer for multiple alignment format (MAF) files in JBrowse 2
Last synced: 12 Apr 2025
https://github.com/cmdcolin/graphgenomeviewer
Web based viewer for small to medium GFA format files, similar to Bandage
Last synced: 12 Apr 2025
https://github.com/cmdcolin/logistic_chaos_map
A visualizer for the logistic map, also a demo of rust/wasm+react in a monorepo
create-react-app fractal monorepo react wasm wasm-bindgen
Last synced: 12 Apr 2025
https://cmdcolin.github.io/graphgenomeviewer/
Web based viewer for small to medium GFA format files, similar to Bandage
Last synced: 05 Sep 2025
https://github.com/cmdcolin/fml9000
work in progress music player with Rust+GTK4
Last synced: 12 Apr 2025
https://github.com/cmdcolin/secondary_rewriter
Adds SEQ and QUAL to secondary alignments from SAM/BAM/CRAM
Last synced: 12 Apr 2025
https://github.com/cmdcolin/travigraph
Graph travis-ci build times using command line tools. Deprecated in favor of https://github.com/cmdcolin/travigraphjs
Last synced: 12 Apr 2025
https://github.com/cmdcolin/travigraphjs
A website to plot travis-CI build times
Last synced: 18 Oct 2025
https://github.com/cmdcolin/oddbiology
A collection of weird biological phenomena
Last synced: 28 Jan 2026
https://github.com/cmdcolin/tumblrgraph2
Graph tumblr reblogs with cytoscape.js
Last synced: 30 May 2026
https://github.com/cmdcolin/jbrowse_piechart
A jbrowse plugin that plots the variant data as a piechart
Last synced: 12 Apr 2025
https://github.com/cmdcolin/babel-array-flat-demo
Demonstrates babel setup to polyfill Array.prototype.flat
Last synced: 04 Mar 2025
https://github.com/cmdcolin/vcfverifier
Check that a VCF matches a given reference genome
Last synced: 12 Apr 2025
https://github.com/cmdcolin/jbrowse-plugin-graphgenomeviewer
A JBrowse 2 graph genome viewer (WIP)
Last synced: 23 Aug 2025
https://github.com/cmdcolin/tenest
A backup of the source code for TEnest, found on archive.org
Last synced: 24 Sep 2025
https://github.com/cmdcolin/maf2bed
Converts multiple alignment format (MAF) files to a bed file for tabixing
Last synced: 06 Jun 2026
https://github.com/cmdcolin/twitter_fractal_bot
Posts random images of fractals to twitter
Last synced: 07 Jun 2026
https://github.com/cmdcolin/colorbycds
A JBrowse plugin to color the features and DNA track according the coding frame
Last synced: 12 Sep 2025
https://github.com/cmdcolin/track_layout_benchmark
Benchmarking different layout algorithms used for genomic feature tracks
Last synced: 01 Mar 2026
https://github.com/cmdcolin/genomesignals
A collection of types of genomic signals different people plot
Last synced: 05 Mar 2026
https://github.com/cmdcolin/resort
A javascript shuffling and resorting of an image for a cool visual effect
Last synced: 10 Oct 2025
https://github.com/cmdcolin/shinytemplate
A basic template for developing a shiny app as an R package, with some proposed "best practices"
Last synced: 10 Jun 2026
https://github.com/cmdcolin/whole_genome_alignment_pipeline
A experimental whole genome alignment pipeline
Last synced: 06 Mar 2026
https://github.com/cmdcolin/jbrowse-plugin-cnvpytor
A base implementation for a cnvpytor plugin
Last synced: 19 Apr 2026
https://github.com/cmdcolin/ytshuffle
fetches all videos from a channel or channels, and shuffles them
Last synced: 17 Apr 2026
https://github.com/cmdcolin/pairwise_indexed_paf
An experimental demo of "pairwise indexing" the PAF format using tabix
Last synced: 23 Apr 2026
https://github.com/cmdcolin/manytracks
A small JBrowse plugin to help in configuring lots of tracks!
Last synced: 19 Apr 2026
https://github.com/cmdcolin/mpileupplugin
A JBrowse plugin for plotting mpilup style data
Last synced: 23 Jun 2025
https://github.com/cmdcolin/jbrowse_in_react_app
Using JBrowse in a react app
Last synced: 07 Jun 2026
https://github.com/cmdcolin/anndata_inspector
scverse hackathon project to visually inspect anndata objects in the notebook environment
Last synced: 08 Oct 2025
https://github.com/cmdcolin/freqmod
A simple frequency modulation synthesizer
Last synced: 29 May 2026
https://github.com/cmdcolin/jbrowse-plugin-ucsc-api
A JBrowse 2 plugin for accessing the UCSC API
Last synced: 12 Apr 2025
https://github.com/cmdcolin/encodeplugin
A JBrowse plugin for viewing data from encodeproject.org
Last synced: 22 Aug 2025
https://github.com/cmdcolin/synteny_finding_experiment
Trying to find syntenic blocks between genomes
Last synced: 04 Mar 2025
https://github.com/cmdcolin/express_cross_origin_isolated
A express js static server that sets cross-origin isolated headers
Last synced: 11 Jul 2025
https://github.com/cmdcolin/htslib_emscripten
Converting htslib to javascript via emscripten
Last synced: 20 Aug 2025
https://github.com/cmdcolin/freqmod2
A frequency modulation synthesizer for node.js, makes crazy noise
Last synced: 04 Mar 2025
https://github.com/cmdcolin/jbrowse-plugin-riboseq
A WIP for a biostar question
Last synced: 07 May 2026
https://github.com/cmdcolin/jbrowse-plugin-biothings-api
JBrowse 2 plugin for biothings.info related things e.g. mygene.info and myvariant.info
Last synced: 12 Sep 2025
https://github.com/cmdcolin/mui_datagrid_jest_infinite_loop
Demo repo demonstrating an infinite loop using the MUI datagrid
Last synced: 04 Mar 2025
https://github.com/cmdcolin/heartfelt
A list of blogs describing suicides effects on people
Last synced: 07 Mar 2026
https://github.com/cmdcolin/pako_error_in_cra5
A demo showing pako can't be built in CRA5
Last synced: 15 Oct 2025
https://github.com/cmdcolin/useminimalpackage
uses @cmdcolin/minimalpackage and @cmdcolin/minimalpackage2 to show multiple different major semver are imported
Last synced: 12 Apr 2025
https://github.com/cmdcolin/source_map_tests
Testing JS minification+source maps
Last synced: 06 Mar 2026
https://github.com/cmdcolin/jbrowse-plugin-modifyhttpheaders
Demo plugin adding HTTP headers to a track
Last synced: 28 Oct 2025
https://github.com/cmdcolin/itunes-monitor
iTunes plug-in for Windows using COM interface
Last synced: 25 Sep 2025
https://github.com/cmdcolin/predictions
A small "database" of predictions that experts make
Last synced: 09 Mar 2026
https://github.com/cmdcolin/region_retriever
A small script to retrieve jbrowse data from a region
Last synced: 31 May 2026