Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by cmdcolin
A curated list of projects in awesome lists by cmdcolin .
https://cmdcolin.github.io/awesome-genome-visualization/?latest=true
A list of interesting genome browser or genome-browser-like implementations
genome-browsers genomic-visualizations
Last synced: 13 Nov 2024
https://github.com/cmdcolin/oddgenes
A small database of weird gene annotations
Last synced: 15 Nov 2024
https://github.com/cmdcolin/mafviewer
A JBrowse plugin to view multiple alignment format (MAF) files
Last synced: 15 Nov 2024
https://github.com/cmdcolin/technical_oddities
A compilation of short descriptions of tech oddities that are weird, debunked or not
Last synced: 15 Nov 2024
https://github.com/cmdcolin/nextjs-appdir-blog
A basic setup for creating a static site/blog using the next 13 "app" directory
Last synced: 15 Nov 2024
https://github.com/cmdcolin/logistic_chaos_map
A visualizer for the logistic map, also a demo of rust/wasm+react in a monorepo
create-react-app fractal monorepo react wasm wasm-bindgen
Last synced: 15 Nov 2024
https://github.com/cmdcolin/graphgenomeviewer
Web based viewer for small to medium GFA format files, similar to Bandage
Last synced: 15 Nov 2024
https://github.com/cmdcolin/jbrowse-plugin-mafviewer
A viewer for multiple alignment format (MAF) files in JBrowse 2
Last synced: 15 Nov 2024
https://github.com/cmdcolin/fml9000
work in progress music player with Rust+GTK4
Last synced: 15 Nov 2024
https://github.com/cmdcolin/secondary_rewriter
Adds SEQ and QUAL to secondary alignments from SAM/BAM/CRAM
Last synced: 15 Nov 2024
https://github.com/cmdcolin/travigraph
Graph travis-ci build times using command line tools. Deprecated in favor of https://github.com/cmdcolin/travigraphjs
Last synced: 15 Nov 2024
https://github.com/cmdcolin/travigraphjs
A website to plot travis-CI build times
Last synced: 15 Nov 2024
https://github.com/cmdcolin/jbrowse_piechart
A jbrowse plugin that plots the variant data as a piechart
Last synced: 15 Nov 2024
https://github.com/cmdcolin/tumblrgraph2
Graph tumblr reblogs with cytoscape.js
Last synced: 15 Nov 2024
https://github.com/cmdcolin/babel-array-flat-demo
Demonstrates babel setup to polyfill Array.prototype.flat
Last synced: 15 Nov 2024
https://github.com/cmdcolin/vcfverifier
Check that a VCF matches a given reference genome
Last synced: 15 Nov 2024
https://github.com/cmdcolin/oddbiology
A collection of weird biological phenomena
Last synced: 15 Nov 2024
https://github.com/cmdcolin/maf2bed
Converts multiple alignment format (MAF) files to a bed file for tabixing
Last synced: 15 Nov 2024
https://github.com/cmdcolin/colorbycds
A JBrowse plugin to color the features and DNA track according the coding frame
Last synced: 15 Nov 2024
https://github.com/cmdcolin/twitter_fractal_bot
Posts random images of fractals to twitter
Last synced: 15 Nov 2024
https://github.com/cmdcolin/resort
A javascript shuffling and resorting of an image for a cool visual effect
Last synced: 15 Nov 2024
https://github.com/cmdcolin/genomesignals
A collection of types of genomic signals different people plot
Last synced: 15 Nov 2024
https://github.com/cmdcolin/jbrowse-plugin-cnvpytor
A base implementation for a cnvpytor plugin
Last synced: 15 Nov 2024
https://github.com/cmdcolin/encodeplugin
A JBrowse plugin for viewing data from encodeproject.org
Last synced: 15 Nov 2024
https://github.com/cmdcolin/manytracks
A small JBrowse plugin to help in configuring lots of tracks!
Last synced: 15 Nov 2024
https://github.com/cmdcolin/anndata_inspector
scverse hackathon project to visually inspect anndata objects in the notebook environment
Last synced: 15 Nov 2024
https://github.com/cmdcolin/whole_genome_alignment_pipeline
A experimental whole genome alignment pipeline
Last synced: 15 Nov 2024
https://github.com/cmdcolin/jbrowse_in_react_app
Using JBrowse in a react app
Last synced: 15 Nov 2024
https://github.com/cmdcolin/tenest
A backup of the source code for TEnest, found on archive.org
Last synced: 15 Nov 2024
https://github.com/cmdcolin/jbrowse-plugin-ucsc-api
A JBrowse 2 plugin for accessing the UCSC API
Last synced: 15 Nov 2024
https://github.com/cmdcolin/synteny_finding_experiment
Trying to find syntenic blocks between genomes
Last synced: 15 Nov 2024
https://github.com/cmdcolin/htslib_emscripten
Converting htslib to javascript via emscripten
Last synced: 15 Nov 2024
https://github.com/cmdcolin/pairwise_indexed_paf
An experimental demo of "pairwise indexing" the PAF format using tabix
Last synced: 15 Nov 2024
https://github.com/cmdcolin/ytshuffle
fetches all videos from a channel or channels, and shuffles them
Last synced: 15 Nov 2024
https://github.com/cmdcolin/freqmod2
A frequency modulation synthesizer for node.js, makes crazy noise
Last synced: 15 Nov 2024
https://github.com/cmdcolin/mpileupplugin
A JBrowse plugin for plotting mpilup style data
Last synced: 15 Nov 2024
https://github.com/cmdcolin/freqmod
A simple frequency modulation synthesizer
Last synced: 15 Nov 2024
https://github.com/cmdcolin/shinytemplate
A basic template for developing a shiny app as an R package, with some proposed "best practices"
Last synced: 15 Nov 2024
https://github.com/cmdcolin/express_cross_origin_isolated
A express js static server that sets cross-origin isolated headers
Last synced: 15 Nov 2024
https://github.com/cmdcolin/filterplugin
A JBrowse plugin implementing the filter API
Last synced: 15 Nov 2024
https://github.com/cmdcolin/guygrrcounter
a really dumb pun that has been taken to far. a raspberry pi project
Last synced: 15 Nov 2024
https://github.com/cmdcolin/narrowpeak
A (small) JBrowse plugin to view the narrowPeak file format
Last synced: 15 Nov 2024
https://github.com/cmdcolin/strip-gene-from-gff
Removes gene level features from gff
Last synced: 15 Nov 2024
https://github.com/cmdcolin/predictions
A small "database" of predictions that experts make
Last synced: 15 Nov 2024
https://github.com/cmdcolin/remoteblast
A JBrowse plugin to do remote BLAST sequence searches
Last synced: 15 Nov 2024
https://github.com/cmdcolin/pixelvalentine
allegro graphic valentine with silly effects
Last synced: 15 Nov 2024
https://github.com/cmdcolin/multiple_meanings
A textfile listing of things that have multiple meanings, inspired by music
Last synced: 15 Nov 2024
https://github.com/cmdcolin/linkedreadsviewer
A JBrowse plugin for viewing linked reads
Last synced: 15 Nov 2024
https://github.com/cmdcolin/mui_datagrid_jest_infinite_loop
Demo repo demonstrating an infinite loop using the MUI datagrid
Last synced: 15 Nov 2024
https://github.com/cmdcolin/interaction_shadow
a audiovisual harsh noise wall
Last synced: 15 Nov 2024
https://github.com/cmdcolin/macs-accessories
visualizations for macs output
Last synced: 15 Nov 2024