Ecosyste.ms: Awesome
An open API service indexing awesome lists of open source software.
Projects in Awesome Lists by federicomarini
A curated list of projects in awesome lists by federicomarini .
https://github.com/federicomarini/genetonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
bioconductor bioconductor-package data-exploration data-visualization functional-enrichment-analysis gene-expression gui pathway-analysis r reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome transcriptomics user-friendly
Last synced: 29 Oct 2024
https://github.com/federicomarini/pcaexplorer
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
bioconductor principal-components r reproducible-research rna-seq-analysis rna-seq-data shiny transcriptome user-friendly
Last synced: 30 Oct 2024
https://github.com/federicomarini/ideal
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
bioconductor differential-expression r reproducible-research rna-seq rna-seq-analysis shiny user-friendly
Last synced: 30 Oct 2024
https://github.com/federicomarini/genetonicworkshop
https://federicomarini.github.io/GeneTonicWorkshop
Last synced: 16 Oct 2024
https://github.com/federicomarini/hcadata
Access data from the Human Cell Atlas project, directly via R/Bioconductor
bioconductor dataset experimenthub human-cell-atlas rna-seq single-cell-rna-seq
Last synced: 16 Oct 2024
https://github.com/federicomarini/flowcatchr
A framework for tracking and analyzing flowing blood cells in time lapse microscopy images
bioconductor fluorescence microscopy particles r tracking
Last synced: 16 Oct 2024
https://github.com/federicomarini/sessiondiffo
Compare `sessionInfo`s in a smooth way
comparison r sessions troubleshooting
Last synced: 16 Oct 2024
https://github.com/federicomarini/bettr
A better way to explore what is best
Last synced: 16 Oct 2024
https://github.com/federicomarini/flowstudio
Docker image for flowcatchR in RStudio
Last synced: 16 Oct 2024
https://github.com/federicomarini/simrec
Simulation of recurrent event data in the total time model
Last synced: 16 Oct 2024
https://github.com/federicomarini/erum2018
My presentation for the eRum 2018 conference in Budapest
Last synced: 16 Oct 2024
https://github.com/federicomarini/pcaexplorer_serveredition
The Server Edition for pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Last synced: 16 Oct 2024
https://github.com/federicomarini/biochexwall
Getting a fancy view on the whole Bioconductor-related stickers
Last synced: 16 Oct 2024
https://github.com/federicomarini/docker-ideal
Dockerized deployment of the ideal package
Last synced: 16 Oct 2024
https://github.com/federicomarini/ideal_serveredition
The Server Edition for Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Last synced: 16 Oct 2024
https://github.com/federicomarini/docker-phyloseq
Dockerized deployment of the shiny-phyloseq app
Last synced: 16 Oct 2024
https://github.com/federicomarini/genetonic_supplement
Supplementary Information for the GeneTonic manuscript
Last synced: 16 Oct 2024
https://github.com/federicomarini/docker-isee
Dockerized deployment of the iSEE package
Last synced: 16 Oct 2024
https://github.com/federicomarini/trend-db
Home to the development of the TREND-DB application
alternative-polyadenylation alternative-splicing data-exploration database enrichment-analysis rnai-screening trendseq
Last synced: 16 Oct 2024
https://github.com/federicomarini/docker-genetonic
Dockerized deployment of the GeneTonic package
Last synced: 16 Oct 2024
https://github.com/federicomarini/har
A Palette Generator Inspired by Haribo Gummy Candies
Last synced: 16 Oct 2024
https://github.com/federicomarini/dotfiles
An ongoing collection of the dotfiles configuration files I tend to use
Last synced: 16 Oct 2024
https://github.com/federicomarini/rnaseq-workflow
Workflow repository for a basic RNAseq workflow.
Last synced: 16 Oct 2024
https://github.com/federicomarini/flowjupy
Docker image for flowcatchR in Jupyter Notebooks
Last synced: 16 Oct 2024
https://github.com/federicomarini/flowshiny
Docker image for flowcatchR in a Shiny app
Last synced: 16 Oct 2024
https://github.com/federicomarini/flowcatchr-release
A framework for tracking and analyzing flowing blood cells in time lapse microscopy images - Release version
Last synced: 16 Oct 2024
https://github.com/federicomarini/shinyimbei
The landing page for the Shiny Server hosted at the IMBEI
Last synced: 16 Oct 2024
https://github.com/federicomarini/plateletopedia
A comprehensive resource for platelet transcriptomics
Last synced: 16 Oct 2024
https://github.com/federicomarini/rbioc2016
rbioc2016 contains the datasets used in the course and other extra material
Last synced: 16 Oct 2024
https://github.com/federicomarini/biocforge
My personal forge of Bioconductor related objects and packages
Last synced: 16 Oct 2024
https://github.com/federicomarini/dockerflow
Docker-compose setup for simultaneous running of the flowcatchR-based containers
Last synced: 16 Oct 2024
https://github.com/federicomarini/bioc2020bof
Repository hosting the slides for the birds-of-a-feather session at Bioconductor 2020, 10 simple rules for thriving in bioinformatic research
Last synced: 16 Oct 2024