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Projects in Awesome Lists by matthiaskoenig

A curated list of projects in awesome lists by matthiaskoenig .

https://github.com/matthiaskoenig/sbmlutils

Python utilities for SBML

python sbml

Last synced: 06 Apr 2025

https://github.com/matthiaskoenig/pkdb

Pharmacokinetics database

Last synced: 13 May 2025

https://github.com/matthiaskoenig/brendapy

BRENDA parser in python

Last synced: 13 May 2025

https://github.com/matthiaskoenig/cy3sbml

cy3sbml: SBML for Cytoscape 3

cytoscape graphs sbml systems-biology visualization

Last synced: 13 May 2025

https://github.com/matthiaskoenig/dfba

Encoding Dynamic Flux Balance Analysis in SBML

dfba sbml simulation

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/exsimo

Executable simulation model of the liver

Last synced: 13 May 2025

https://github.com/matthiaskoenig/libsbgnpy

Python library for SBGN

combine python sbgn

Last synced: 11 Apr 2025

https://github.com/matthiaskoenig/fbc_curation

FROG analysis in python for the reproducibility of FBC models

fbc fva sbml

Last synced: 13 May 2025

https://github.com/matthiaskoenig/pymetadata

Python utilities for working with metadata and COMBINE archives

Last synced: 13 May 2025

https://github.com/matthiaskoenig/neo4sbml

Neo4j representation of SBML model components and annotations

Last synced: 13 May 2025

https://github.com/matthiaskoenig/mcp

Lecture: Models of Cellular Processes

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/opentrials

OpenTrials Hackathon

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/sbmlsim

sbmlsim: SBML simulation made easy

sbml sbml-simulation

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/annotatedb

Annotation database for computational models

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/cy2sbml

cy2sbml: SBML for Cytoscape 2

cytoscape cytoscape-plugin sbml

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/pkpd-course

PK/PD Tutorial

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/itbtechtalks

Tech talks for the ITB

Last synced: 13 May 2025

https://github.com/matthiaskoenig/networksimdb

Metabolic Network Toolbox

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/pkpd-tutorial

Tutorial for building physiological-based models for liver function testing

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/livermetabolism-site

König Lab Homepage

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/pkdb_analysis

PKDB python library

Last synced: 13 May 2025

https://github.com/matthiaskoenig/sbml-merge

Merging SBML models with libsbml python bindings

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/cy3sabiork

Cytoscape 3 app to access kinetic information from SABIO-RK

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/petabunit

Support for units and unit conversions in PEtab

Last synced: 13 May 2025

https://github.com/matthiaskoenig/porous_media

python utilities for porous media analysis and visualization

Last synced: 13 May 2025

https://github.com/matthiaskoenig/pancreas_minimal

Minimal pancreas model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/pravastatin-model

Pravastatin physiological based pharmacokinetics model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/modelling_ws2018

Material for modelling tutorials (Humboldt University Berlin, WS2018)

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/talinolol-model

Physiologically based pharmacokinetic (PBPK) model of talinolol.

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/tellurium-web

Tellurium Web Tools

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/linux-setup

Linux setup for COMBINE computational simulations

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/glucose-model

Hepatic glucose model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/glimepiride-model

Physiologically based pharmacokinetic (PBPK) model of glimepiride

Last synced: 14 Mar 2025

https://github.com/matthiaskoenig/losartan-model

Physiologically based pharmacokinetics (PBPK) model of losartan

Last synced: 29 Mar 2025

https://github.com/matthiaskoenig/pkpdbib

PK/PD bibliography and literature tools

Last synced: 28 Feb 2025

https://github.com/matthiaskoenig/python-introduction

Python introductory material

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/sbscl-simulator-comparison

Comparing SBSCL simulation results with other simulators

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/bdl-analysis

BDL analysis

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/omeprazole-model

Omeprazole PK/PD model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/cyfluxviz-toolbox

cyfluxviz cobra integration

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/sorafenib-model

Sorafenib PBPK model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/icg_webapp

Streamlit ICG webapp

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/icg-model

Indocyanine green physiological based pharmacokinetics model (PBPK)

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/labelstudio

Setup of label studio

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/spt-model

SPT model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/tellurium-cas

CombineArchiveShowcase with tellurium

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/iri-model

Hepatocyte model of ischemia reperfusion injury (IRI)

sbml sbml-model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/fair-ca-visualization

Visualization of FAIR COMINE indicators

combine fair

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/lisym-tutorial

LiSyM Modeling Tutorial Hünfeld

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/enalapril-model

Physiologically based pharmacokinetic (PBPK) model of enalapril

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/metoprolol-model

Metoprolol PBPK/PD model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/protein-distribution-app

Database of protein variability of CYP, UGT, ABC and SLC in human liver

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/parameter-variability

Bayesian models for ODE models in the Systems Biology Markup Language (SBML)

bayesian ode ode-model pymc sbml

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/limax

LiMAx tools

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/flutype_analysis

Analysis scripts for FluType microarray and microtiter data

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/python-tutorial

Introduction to python

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/simvastatin-model

Simvastatin and cholesterol model

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/gluconamics

gluconamics website

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/model-embedding

Coupling constraint-based and kinetic models

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/cy2sabiork

[DEPRECATED] cy2sabiork: SABIO-RK for Cytoscape 2

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/combine2022

COMBINE 2022 meeting Berlin

Last synced: 23 Feb 2025

https://github.com/matthiaskoenig/cy3robundle

Minimal example including taverna robundle

Last synced: 23 Feb 2025