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Synthetic biology
Synthetic biology (SynBio) is a multidisciplinary area of research that seeks to create new biological parts, devices, and systems, or to redesign systems that are already found in nature.
- GitHub: https://github.com/topics/synthetic-biology
- Wikipedia: https://en.wikipedia.org/wiki/Synthetic_biology
- Aliases: synbio,
- Last updated: 2024-11-08 00:29:02 UTC
- JSON Representation
https://github.com/CIDARLAB/cello
Genetic circuit design automation
bio-design-automation boolean-logic cello circuit genetic-circuit-design-automation synthetic-biology
Last synced: 02 Aug 2024
https://github.com/bebop/poly
A Go package for engineering organisms.
alignment bioengineering bioinformatics codon-optimizer computational-biology dna dna-barcode dna-barcoding fasta genbank genetic-engineering go golden-gate mash molecular-biology plasmids primer-design sequence-hashing synbio synthetic-biology
Last synced: 02 Aug 2024
https://github.com/Merck/deepbgc
BGC Detection and Classification Using Deep Learning
bidirectional-lstm biosynthetic-gene-clusters deep-learning deepbgc natural-products pfam2vec python synthetic-biology
Last synced: 03 Aug 2024
https://github.com/ChristophReich1996/Cell-DETR
Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].
attention bibm-2020 cell-detr cell-segmentation deep-learning instance-segmentation synthetic-biology system-biology transformer
Last synced: 02 Aug 2024
https://github.com/edinburgh-genome-foundry/primavera
:cherry_blossom: Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.
dna-assembly primer-design sequencing synthetic-biology
Last synced: 07 Nov 2024
https://github.com/georgeoshardo/SyMBac
Accurate segmentation of bacterial microscope images using synthetically generated image data.
biology image-processing microscopy segmentation synthetic-biology
Last synced: 03 Aug 2024
https://github.com/edinburgh-genome-foundry/kappagate
:crystal_ball: Predict DNA assembly clone validity rates - powered by Kappa
biological-simulations dna-assembly kappa-language lab-automation sequence-design synthetic-biology
Last synced: 27 Oct 2024
https://github.com/jacobgrisham/synthetic-biology-lims
(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS through Google Domains.
circleci django django-rest-framework docker docker-compose full-stack-web-development kubernetes lims microservices-architecture postgresql python react redis redux rest-api restful-api styled-components synbio synthetic-biology typescript
Last synced: 21 Oct 2024
https://github.com/JacobGrisham/Synthetic-Biology-LIMS
(In development) Microservices full-stack single-page web app built with Typescript, React, Redux, Styled Components (for CSS-in-JS), Python, Django, Redis, and PostgreSQL. Separate servers for LIMS and Payments hosted on AWS EC2 instances with Kubernetes and circleci CI/CD. Database hosted on AWS DynamoDB. CDN through AWS Cloudfront and DNS through Google Domains.
circleci django django-rest-framework docker docker-compose full-stack-web-development kubernetes lims microservices-architecture postgresql python react redis redux rest-api restful-api styled-components synbio synthetic-biology typescript
Last synced: 08 Nov 2024
https://github.com/stracquadaniolab/mooda
A DNA design and assembly method based on multi-objective optimization.
assembly dna-sequence evolutionary-algorithms optimisation synthetic-biology
Last synced: 12 Oct 2024
https://github.com/gszep/double-exclusive-reporter
Code supplementary for Grant P. et al. 2020. Interpretation of morphogen gradients by a bistable circuit
biophysics julia-language microsoft morphogenesis simulation synthetic-biology
Last synced: 23 Oct 2024
https://github.com/j-e-j-s/aars-pipeline
A Scalable Pipeline for Discovery of aaRS Mutants to Aid in Genetic Code Expansion.
bioengineering bioinformatics biology computational-biology nextflow pipeline python synthetic-biology
Last synced: 29 Oct 2024
https://github.com/bradyajohnston/reluxr
Deconvolute Luminescence Readings on Bacterial Culture Plates
plate-reader r r-package synthetic-biology
Last synced: 08 Nov 2024
https://github.com/j-e-j-s/gb2fasta
Convert GenBank Files to FASTA Without Leaving the Terminal.
bioinformatics cli synthetic-biology
Last synced: 08 Nov 2024
https://github.com/amorehead/synbio-mat
A repository for mathematical applications in the context of synthetic biology research.
distribution machine-learning optimization pooling probability synthetic-biology
Last synced: 25 Oct 2024
