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Projects in Awesome Lists tagged with mass-spectrometry

A curated list of projects in awesome lists tagged with mass-spectrometry .

https://github.com/dev-ev/bokeh-qc-dashboard

QC dashboard for LC-MS proteomic equipment using python and bokeh

bokeh bokeh-dashboard data-visualization mass-spectrometry orbitrap-ms performance-monitoring proteomics

Last synced: 19 Nov 2024

https://github.com/dev-ev/shiny-qc-dashboard

QC dashboard for LC-MS proteomic equipment using R and shinydashboard

dashboard data-visualization mass-spectrometry orbitrap-ms performance-monitoring proteomics shiny shinydashboard

Last synced: 19 Nov 2024

https://github.com/yufree/dartms

Direct Analysis in Real Time (DART) Mass Spectrometry Data Analysis

analytical-chemistry dart mass-spectrometry

Last synced: 20 Dec 2024

https://github.com/MetaboHUB-MetaToul-FluxoMet/RTMet

RTMet is a data workflow to process FIA-MS data coming from a fermenter, find metabolites and fluxes, and send a feedback command to the fermenter.

cylc fie-hrms fie-ms mass-spectrometry metabolomics metabolomics-pipeline real-time

Last synced: 10 Nov 2024

https://github.com/marekmosna/pgms

Postgres mass spectromentry extension

bioinformatics cpp mass-spectrometry plpgsql postgres postgresql sql

Last synced: 17 Dec 2024

https://github.com/jasenfinch/grover

Web API Framework for Mass Spectrometry Data Transfer

conversion mass-spectrometry metabolomics-data metadata plumber-api r-package transfer web-api

Last synced: 18 Dec 2024

https://github.com/jasenfinch/spectral_binning_as_an_approach_to_post-acquisition_processing_of_fie-hrms_data

Spectral binning as an approach to post-acquisition processing of high resolution FIE-HRMS metabolome fingerprinting data

manuscript mass-spectrometry metabolomic-fingerprinting metabolomics post-acquisition-processing reproducible-research

Last synced: 18 Dec 2024

https://github.com/sgibb/topdownr

R-package for the analysis of Thermo Orbitrap Fusion Top-Down Proteomic Data.

mass-spectrometry proteomics r topdown

Last synced: 27 Oct 2024

https://github.com/tnaake/metnet

GitHub repository for MetNet. The development version in Bioconductor can be found at:

mass-spectrometry metabolomics metabolomics-pipeline r

Last synced: 24 Nov 2024

https://github.com/benjaminjack/parsemsf

An R package for parsing Thermo MSF mass spectrometry files

bioinformatics mass-spectrometry protein-quantification proteomics

Last synced: 18 Dec 2024

https://github.com/gieses/pytrapment

pytrapment - making entrapment databases great again!

mass-spectrometry proteomics statistics

Last synced: 16 Nov 2024

https://github.com/rformassspectrometry/msbackendhmdb

Mass spectrometry data backend (MsBackend) for Spectra supporting import and handling of MS/MS spectra from the Human Metabolome Database (HMDB).

data-import mass-spectrometry metabolomics

Last synced: 16 Nov 2024

https://github.com/fgcz/specl

prepare peptide spectrum matches for use in targeted proteomics using R and Bioconductor

dda dia mass-spectrometry proteomics

Last synced: 15 Dec 2024

https://github.com/idslme/idsl.npa

A pipeline for processing nominal mass spectrometry data to create .msp files for untargeted MS/MS workflows.

cran gcms mass-spectrometry metabolomics r spectral-entropy

Last synced: 17 Nov 2024

https://github.com/sgibb/talk-odense-20171127

Example files for talk in Odense 2017

mass-spectrometry proteomics talk

Last synced: 22 Dec 2024

https://github.com/sajfb/isotopic-profile-deconvolution-chromatogram-ipdc-algorithm

The IPDC algorithm was developed to screen for a wide variety of organic compounds in high-resolution mass spectrometry (HRMS) data acquired from instruments with resolution power as low as 22 000 fwhm.

apgc environmental-monitoring environmental-toxicology gc-ms isotopic-distribution-calculations lc-ms mass-spectrometry

Last synced: 17 Nov 2024

https://github.com/sgibb/topdownrdata

Example data for the `topdown` R package

mass-spectrometry proteomics r topdown

Last synced: 22 Dec 2024

https://github.com/lgatto/2020_05_07_mayinstitute

Notes from my talk at the (remote) May Institute 2020

bioconductor mass-spectrometry metabolomics msnbase msnbaseboxcar proteomics r talk

Last synced: 19 Nov 2024

https://github.com/alexhuszagh/numpress

Rust implementation of compression schemes for mass spectrometer numeric data.

compression mass-spectrometry no-std rust science

Last synced: 16 Nov 2024

https://github.com/dev-ev/qc-script-pd24

QC scripts for LC-MS proteomic equipment based on Proteome Discoverer 2.4 output

lumos mass-spectrometer mass-spectrometry orbitrap-ms proteome-discoverer proteomics proteomics-data qc-scripts sqlite-database

Last synced: 19 Nov 2024

https://github.com/wasimsandhu/searchms

Search engine for mass spectrometry databases

mass-spectrometry metabolomics

Last synced: 18 Nov 2024

https://github.com/mvisani/mv_pairwise_alignment

This program allows to execute Pairwise alignment of proteins from a MS file.

mass-spectrometry pairwise-alignment

Last synced: 16 Nov 2024

https://github.com/dev-ev/gag-search-dashboard

Script for quantification of glucosaminoglycans (GAGs) based on Proteome Discoverer output, with web-interface powered by Bokeh

clustering glycans glycobiology mass-spectrometry orbitrap-ms proteome-discoverer

Last synced: 19 Nov 2024

https://github.com/ralfg/workflow_pxd_to_speclib

Snakemake workflow that reanalyzes proteomics data from a PRIDE Archive project to create a spectral library

mass-spectrometry msgfplus percolator pride-database proteomics snakemake thermorawfileparser

Last synced: 14 Dec 2024

https://github.com/pgarrett-scripps/timstofextractorgui

A GUI to convert Bruker Raw files (.d) to an .ms2 file format

bruker gui mass-spectrometry proteomics python timstof

Last synced: 05 Dec 2024

https://github.com/jwist/lamps

lamps-network website for the Latin American Metabolic Profiling Society, a conference

conferences mass-spectrometry meetings metabolic-profiling networking nmr-spectroscopy research

Last synced: 09 Nov 2024