Projects in Awesome Lists by lgatto
A curated list of projects in awesome lists by lgatto .
https://github.com/lgatto/teachingmaterial
Various teaching material
data-analysis make makefile oo-programming programming-tutorial proteomics r statistics teaching-materials vectorisation visualisation
Last synced: 18 Nov 2024
https://github.com/lgatto/MSnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
bioconductor bioinformatics mass-spectrometry proteomics proteomics-data r visualisation
Last synced: 30 Apr 2025
https://github.com/lgatto/msnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
bioconductor bioinformatics mass-spectrometry proteomics proteomics-data r visualisation
Last synced: 14 Apr 2025
https://github.com/lgatto/rforproteomics
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
bioconductor bioconductor-packages mass-spectrometry proteomics proteomics-data r tutorial
Last synced: 17 Mar 2025
https://github.com/lgatto/intromachinelearningwithr
An Introduction to Machine Learning with R
Last synced: 17 Mar 2025
https://github.com/lgatto/tidies
A Grammar of Data Manipulation for Omics Data
Last synced: 10 Apr 2025
https://github.com/lgatto/proloc
A unifying bioinformatics framework for organelle proteomics
bioconductor proteomics proteomics-data r spatial-proteomics visualisation
Last synced: 06 Apr 2025
https://github.com/lgatto/2016-02-25-adv-programming-embl
More robust R programming, testing and debugging
Last synced: 10 Apr 2025
https://github.com/lgatto/advr1
Advanced R 1-day course taught at the University of Cambridge
Last synced: 10 Apr 2025
https://github.com/lgatto/rols
An R package to query EBI's Ontology Lookup Service (OLS)
Last synced: 15 Mar 2025
https://github.com/lgatto/lgatto.github.io
My github page
bioinformatics blog computational-biology programming proteomics r research science
Last synced: 21 Mar 2025
https://github.com/lgatto/2017-04-03-adv-r-progr-embl
Advanced R programming course at EMBL, 3-4 April 2017
Last synced: 10 Apr 2025
https://github.com/lgatto/prolocgui
Interactive visualisation and exploration of spatial proteomics data
Last synced: 15 Mar 2025
https://github.com/lgatto/pbase
Manipluating and exploring protein and proteomics data
Last synced: 10 Apr 2025
https://github.com/lgatto/2017_11_09_rcourse_jena
R course, Leibniz Fritz Lipmann Institute, Jena
Last synced: 10 Apr 2025
https://github.com/lgatto/hpar
A simple interface to the Human Protein Atlas
annotation bioconductor human protein r
Last synced: 10 Apr 2025
https://github.com/lgatto/quantitative-proteomics-and-data-analysis
Material Quantitative Proteomics and Data Analysis Course
Last synced: 14 Mar 2025
https://github.com/lgatto/s4-tutorial
An tutorial on R S4 object oriented programming
Last synced: 10 Apr 2025
https://github.com/lgatto/slide-templates
A set of templates for presentations
Last synced: 14 Mar 2025
https://github.com/lgatto/sequences
Educational package used in an R course to illustrate OO programming and package development.
Last synced: 10 Apr 2025
https://github.com/lgatto/rpx
R Interface to the ProteomeXchange Repository
bioconductor data mass-spectrometry proteomexchange proteomics
Last synced: 21 Mar 2025
https://github.com/lgatto/synapter
Label-free data analysis pipeline for optimal identification and quantitation
Last synced: 21 Mar 2025
https://github.com/lgatto/proteowizard
The ProteoWizard Library and Tools for - http://proteowizard.sourceforge.net/
Last synced: 19 Nov 2024
https://github.com/lgatto/ms-coding-standards
Guidelines for publication of code related to mass spectrometry data analysis
Last synced: 14 Mar 2025
https://github.com/lgatto/r-functional-programming
Short lecture about functional programming in R
Last synced: 14 Mar 2025
https://github.com/lgatto/2024_scpworkshop_eubic
Processing and analysing single-cell proteomics with the scp Bioconductor package.
Last synced: 14 Mar 2025
https://github.com/lgatto/qfeaturesscpworkshop2021
QFeatures and scp Bioc2021 workshop
Last synced: 30 Apr 2025
https://github.com/lgatto/2015-03-05-intro-integ-omics-prot
Introduction to Integrative Omics
Last synced: 14 Mar 2025
https://github.com/lgatto/2021_05_13_mayinstitute
Material for my May Institute 2021 keynote talk
Last synced: 14 Mar 2025
https://github.com/lgatto/r-bioc-ms-challenges
Current and future challenges for MS-based omics
Last synced: 14 Mar 2025
https://github.com/lgatto/biocpkgs
Retrieve Bioconductor package download data
Last synced: 14 Mar 2025
https://github.com/lgatto/2016-10-rbioc-prot-stellenbosch
Material for R/Bioconductor Proteomics Workshop at Stellenbosch University, October 2016
Last synced: 14 Mar 2025
https://github.com/lgatto/quickpackage
A 5 minute introduction on writing R packages
Last synced: 14 Mar 2025
https://github.com/lgatto/bioc-ms-prot
Material about R/Bioconductor for mass spectrometry and proteomics
Last synced: 14 Mar 2025
https://github.com/lgatto/2017-05-03-rstatsintro-neu
Beginner's statistics in R
data introduction plotting r sample-size statistics t-test teaching-materials visualisation
Last synced: 14 Mar 2025
https://github.com/lgatto/rr-rmarkdown-intro-slides
Rmarkdown for reproducible research slides
Last synced: 14 Mar 2025
https://github.com/lgatto/2018_07_09_csama_brixen
An introduction to mass spectrometry-based proteomics
Last synced: 14 Mar 2025
https://github.com/lgatto/proteomicsannotationhubdata
Annotation hub data for proteomics data
Last synced: 14 Mar 2025
https://github.com/lgatto/spectrum
Spectrum Infrastructure for Mass Spectrometry Data
Last synced: 05 Apr 2025
https://github.com/lgatto/proteomicsbioc2016workshop
R/Bioconductor tools for mass spectrometry-based proteomics
Last synced: 14 Mar 2025
https://github.com/lgatto/2017-spatialmap-robin
Robin's 'Spatial Proteomics Data Dissemination' project
Last synced: 14 Mar 2025
https://github.com/lgatto/rpepxml
RpepXML is an R package that allows to import and manipulate pepXML files -- see Wiki for more details.
Last synced: 14 Mar 2025
https://github.com/lgatto/interactive-vis-intro
hort introduction to interactive visualisation in R
Last synced: 14 Mar 2025
https://github.com/lgatto/qfeaturesworkshop2020
QFeatures: Quantitative features for mass spectrometry data
Last synced: 14 Mar 2025
https://github.com/lgatto/2016-05-16-cam
Data Carpentry, University of Cambridge, 16-17 May 2016
Last synced: 14 Mar 2025
https://github.com/lgatto/2014_10_hupo_madrid
Material for HUPO 2014 in Madrid
Last synced: 14 Mar 2025
https://github.com/lgatto/2017-03-30-osc-peerreview
Slides for my talk at the How to Get the Most Out of Modern Peer Review workshop
Last synced: 14 Mar 2025
https://github.com/lgatto/2017_11_16_openconcam
OpenConCam 2017: The #BulliedIntoBadScience campaign
Last synced: 14 Mar 2025
https://github.com/lgatto/2021_08_31_rprotaz_online
Exploring, visualising and analysing mass spectrometry-based proteomics data in R
Last synced: 14 Mar 2025
https://github.com/lgatto/2016-11-17-cam
Introduction to working with data for Humanities Researchers
Last synced: 14 Mar 2025
https://github.com/lgatto/workbench-bioc-intro
Introduction to genomic data analysis with R and Bioconductor
Last synced: 14 Mar 2025
https://github.com/lgatto/r-bmark-prof-optim
R benchmarking, profiling and optimisation
Last synced: 14 Mar 2025
https://github.com/lgatto/open-rr-bioinfo-best-practice
Best practices in bioinformatics research: open source software and reproducibility
Last synced: 14 Mar 2025
https://github.com/lgatto/proteomicsbioc2014workshop
Bioc2014 workshop on R / Bioconductor packages for Proteomics
Last synced: 14 Mar 2025
https://github.com/lgatto/r-vectorisation
Short lecture about vectorisation in R
Last synced: 14 Mar 2025
https://github.com/lgatto/visualisingbiomoleculardata
Visualising biomolecular data
Last synced: 05 Apr 2025
https://github.com/lgatto/open-scholarship-curriculum
An open scholarship curriculum
Last synced: 14 Mar 2025
https://github.com/lgatto/qsep-manuscript
Assessing sub-cellular resolution in spatial proteomics experiments
proloc prolocdata proteomics spatial-proteomics
Last synced: 14 Mar 2025
https://github.com/lgatto/biocmassspecworkinggroup
Bioconductor Mass Spectrometry Working Group
Last synced: 14 Mar 2025
https://github.com/lgatto/r-parallel
Short lecture about parallelisation in R
Last synced: 14 Mar 2025
https://github.com/lgatto/2020-msnbase-v2
MSnbase v2 paper
bioconductor mass-spectrometry massspectrometry metabolomics msnbase proteomics
Last synced: 14 Mar 2025
https://github.com/lgatto/mlinterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containers - see http://bioconductor.org/packages/release/bioc/html/MLInterfaces.html for official code.
Last synced: 30 Apr 2025
https://github.com/lgatto/bioc2013-poster
'Using R and Bioconductor for proteomics data analysis' poster for the Bioconductor 2013 conference
Last synced: 14 Mar 2025
https://github.com/lgatto/2015-05-14-stellenbosch
Software Carpentry Bootcamp, Stellenbosch, South Africa
Last synced: 14 Mar 2025
https://github.com/lgatto/2019_05_16_rr_delft
My talk at the 'Are you ready for publishing reproducible research?' meeting
Last synced: 14 Mar 2025
https://github.com/lgatto/bioc-prolocgui-workflow
pRolocGUI F1000research workflow
Last synced: 14 Mar 2025
https://github.com/lgatto/fmsne
R package implementing fast multi-scale neighour embedding
Last synced: 14 Mar 2025
https://github.com/lgatto/rbasics
A general introduction to R for bioinformaticians familiar with programming/scripting
Last synced: 14 Mar 2025
https://github.com/lgatto/rintro
An introduction to R for beginners, using microarrays as main thread
Last synced: 14 Mar 2025
https://github.com/lgatto/hyperlopit2015-csv
The pRolocdata hyperLOPIT data, as 3 csv files
Last synced: 14 Mar 2025
https://github.com/lgatto/webdata-paper
Paper on web data for the R Journal
Last synced: 14 Mar 2025
https://github.com/lgatto/rauthoring
An introduction to authoring literate programming documents
Last synced: 14 Mar 2025
https://github.com/lgatto/2016_12_6_eurobioc_basel
Slides for the EuroBioc2016 meeting in Basel
Last synced: 14 Mar 2025
https://github.com/lgatto/2017_06_09_rdmf_london
My slides for the Research Data Management Forum 2017
Last synced: 14 Mar 2025
https://github.com/lgatto/2018_01_31_mgm_cms
MGM Critical thinking seminar: An early career researcher's view on modern and open scholarship
Last synced: 14 Mar 2025
https://github.com/lgatto/2019_03_29_stats_lln
Slides for my talk at the Institute of Statistics, Biostatistics and Actuarial Sciences
Last synced: 14 Mar 2025