Projects in Awesome Lists by Genentech
A curated list of projects in awesome lists by Genentech .
https://github.com/genentech/grelu
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
Last synced: 02 Apr 2026
https://github.com/genentech/gReLU
gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.
Last synced: 09 May 2025
https://github.com/genentech/scimilarity
A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.
Last synced: 16 May 2025
https://github.com/genentech/equifold
Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
machine-learning proteins structural-biology structure-prediction
Last synced: 14 Apr 2025
https://github.com/genentech/decima
Decima is a Python library to train sequence models on single-cell RNA-seq data.
Last synced: 14 Jan 2026
https://github.com/genentech/walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
antibody machine-learning protein-design protein-sequences proteins
Last synced: 14 Apr 2025
https://github.com/genentech/regLM
Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
Last synced: 28 Sep 2025
https://github.com/genentech/iterative-perturb-seq
Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
Last synced: 14 Apr 2025
https://github.com/genentech/polygraph
Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.
Last synced: 14 Apr 2025
https://github.com/genentech/beignet
A standard library for biological research.
Last synced: 15 Jul 2025
https://github.com/genentech/isosceles
The Isoforms from Single-Cell; Long-read Expression Suite
Last synced: 25 Aug 2025
https://github.com/genentech/reglm
Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.
Last synced: 14 Apr 2025
https://github.com/genentech/covtracer
Tools for contextualizing tests, built using covr test traces.
Last synced: 09 Jul 2025
https://github.com/Genentech/covtracer
Tools for contextualizing tests, built using covr test traces.
Last synced: 24 Apr 2025
https://github.com/genentech/pysummaries
Generate beautiful summary tables from pandas dataframes
clinical-research pandas pandas-dataframe python real-world-data-analysis summary-statistics table1 tableone tables
Last synced: 15 Oct 2025
https://github.com/genentech/psborrow2
psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis
bayesian-dynamic-borrowing psborrow2 r simulation-study
Last synced: 10 Apr 2025
https://github.com/genentech/ringer
RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion
Last synced: 14 Apr 2025
https://github.com/genentech/absolve
Absolve antibody variable domain sequence analysis
Last synced: 14 Apr 2025
https://github.com/genentech/midashla
R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.
Last synced: 14 Apr 2025
https://github.com/genentech/cremp
CREMP: Conformer-Rotamer Ensembles of Macrocyclic Peptides for Machine Learning
Last synced: 14 Apr 2025
https://github.com/Genentech/molcap-arena
Associated Repository for "MolCap-Arena: A Comprehensive Captioning Benchmark on Language-Enhanced Molecular Property Prediction"
Last synced: 08 Nov 2025
https://github.com/genentech/battery
Architecture framework for Shiny Apps
architecture component-architecture rstats shiny shiny-apps
Last synced: 14 Apr 2025
https://github.com/genentech/faciledataset
A fluent API for accessing multi-assay high-throughput genomics data.
Last synced: 11 Oct 2025
https://github.com/genentech/perturb-ot
Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport.
Last synced: 14 Apr 2025
https://github.com/genentech/molcap-arena
Associated Repository for "MolCap-Arena: A Comprehensive Captioning Benchmark on Language-Enhanced Molecular Property Prediction"
Last synced: 12 Apr 2025
https://github.com/genentech/epiregulon
Construct gene regulatory networks and infer transcription factor (TF) activity in single cells by integration of scATAC-seq and scRNA-seq data and incorporation of public bulk TF ChIP-seq data.
Last synced: 11 Jul 2025
https://github.com/genentech/topological_prm_for_lunghrct
Lung image analysis pipeline for topological PRM maps
copd hrct lung minkowski-functionals parametric-response-mapping topological-data-analysis
Last synced: 10 Mar 2026
https://github.com/genentech/firmament
Provides method to perform gene signature search
Last synced: 01 Mar 2026
https://github.com/genentech/conmedclassify
Process clinical ADaM-format data and classify subjects into profiles based on their concomitant medication usage within a clinical trial.
Last synced: 26 Oct 2025
https://github.com/genentech/stats4phc
Performance evaluation for the prognostic value of predictive models intended to support personalized healthcare through predictiveness curves and positive / negative predictive values.
Last synced: 12 Feb 2026
https://github.com/genentech/quipcell
Fine-scale cellular deconvolution based on Generalized Cross Entropy
Last synced: 30 Mar 2025
https://github.com/genentech/laravel-cdn-middleware
A Basic integration for pull zone CDN's for laravel.
Last synced: 30 Mar 2025
https://github.com/genentech/psborrow
An R package for Bayesian Dynamic Borrowing. Check out the successor psborrow2: https://github.com/Genentech/psborrow2
Last synced: 23 Apr 2025