Projects in Awesome Lists by aqlaboratory
A curated list of projects in awesome lists by aqlaboratory .
https://github.com/aqlaboratory/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
alphafold2 protein-structure pytorch
Last synced: 23 Apr 2025
https://github.com/aqlaboratory/proteinnet
Standardized data set for machine learning of protein structure
dataset deep-learning machine-learning protein-sequence protein-structure proteins
Last synced: 04 Apr 2025
https://github.com/aqlaboratory/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
deep-learning deep-neural-networks protein-structure protein-structure-prediction
Last synced: 07 Apr 2025
https://github.com/aqlaboratory/genie
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
diffusion-models protein-design
Last synced: 18 Nov 2024
https://github.com/aqlaboratory/genie2
Protein structure diffusion model for unconditional protein generation and motif scaffolding
Last synced: 12 Apr 2025
https://github.com/aqlaboratory/hsm
Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
Last synced: 25 Apr 2025
https://github.com/aqlaboratory/insilico_design_pipeline
In-silico design pipeline for evaluating protein structure diffusion models.
Last synced: 15 Apr 2025
https://github.com/aqlaboratory/quickbind
A Light-Weight And Interpretable Molecular Docking Model
Last synced: 15 Apr 2025
https://github.com/aqlaboratory/sh2-cancer
MSM model of SH2-phosphoprotein cancer networks
cancer machine-learning protein-protein-interaction signaling-networks
Last synced: 25 Feb 2025
https://github.com/aqlaboratory/hsm-web
Website associated with the "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."
Last synced: 25 Feb 2025
https://github.com/aqlaboratory/hth-dna-db
Database of HTH-DNA complexes
machine-learning protein-dna-interactions protein-structure transcription-factor-binding transcriptional-regulatory-network
Last synced: 25 Feb 2025