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Projects in Awesome Lists tagged with ecology

A curated list of projects in awesome lists tagged with ecology .

https://github.com/cartesapp/cartes

L'appli Web de cartes grand public

cartes climate cycling ecology maps public-transport transit walking

Last synced: 06 Nov 2024

https://github.com/pbs-assess/sdmtmb

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

ecology glmm r spatial-analysis species-distribution-modelling tmb

Last synced: 18 Jan 2025

https://github.com/pbs-assess/sdmTMB

:earth_americas: An R package for spatial and spatiotemporal GLMMs with TMB

ecology glmm r spatial-analysis species-distribution-modelling tmb

Last synced: 14 Nov 2024

https://github.com/ec0lint/ec0lint

Create sustainable digital environment with ec0lint

css digital-ecology ec0lint ecology eslint javascript linter typescript website

Last synced: 19 Jan 2025

https://github.com/carbonalyser/Carbonalyser

The add-on "Carbonalyser" allows to visualize the electricity consumption and greenhouse gases (GHG) emissions that your Internet browsing leads to.

addon carbon-emissions chrome-extension ecology firefox-addon

Last synced: 14 Nov 2024

https://github.com/PetervanLunteren/EcoAssist

Simplify camera trap image analysis with ML species recognition models based around the MegaDetector model

animals annotation-tool cameratraps classifier-model conservation deploy ecology linux machine-learning macos megadetector object-detection python windows yolov5

Last synced: 09 Nov 2024

https://github.com/gbif/pygbif

GBIF Python client

api biodiversity data ecology gbif

Last synced: 14 Nov 2024

https://github.com/jeffreyevans/spatialeco

R package for spatial analysis and modelling of ecological systems

biodiversity conservation cran ecology r r-package r-spatial raster spatial vector

Last synced: 14 Jan 2025

https://github.com/agentmorris/megadetector

MegaDetector is an AI model that helps conservation folks spend less time doing boring things with camera trap images.

camera-traps cameratraps computer-vision conservation ecology machine-learning megadetector wildlife

Last synced: 19 Jan 2025

https://github.com/jeffreyevans/spatialEco

R package for spatial analysis and modelling of ecological systems

biodiversity conservation cran ecology r r-package r-spatial raster spatial vector

Last synced: 14 Nov 2024

https://github.com/drivendataorg/zamba

A Python package for identifying 42 kinds of animals, training custom models, and estimating distance from camera trap videos

animals camera-traps chimps cli conservation deep-learning ecology gpu jungle machine-learning neural-network python pytorch pytorch-lightning video-processing videos

Last synced: 17 Jan 2025

https://github.com/WildlifeDatasets/wildlife-datasets

WildlifeDatasets: An open-source toolkit for animal re-identification

dataset datasets deep-learning ecology ecology-modelling machine-learning

Last synced: 27 Nov 2024

https://github.com/circuitscape/omniscape.jl

Functions to compute omnidirectional landscape connectivity using circuit theory and the Omniscape algorithm.

animal-movement circuit-analysis circuit-theory circuitscape climate-change connectivity ecology julia-language julia-package landscape-ecology

Last synced: 01 Nov 2024

https://github.com/ecojulia/spatialecology.jl

Julia framework for spatial ecology - data types and utilities

biogeography ecology julia macroecology

Last synced: 13 Nov 2024

https://github.com/traitecoevo/plant

Trait-Driven Models of Ecology and Evolution :evergreen_tree:

c-plus-plus demography dynamic ecology evolution forests plant-physiology r science-research simulation trait

Last synced: 14 Nov 2024

https://github.com/cboettig/noise-phenomena

:notebook: Ecology Letters review paper: Noise-driven phenomena in population biology

ecology reproducible-research research-compendium stochasticity

Last synced: 22 Dec 2024

https://github.com/seananderson/glmmfields

R package for Bayesian spatial and spatiotemporal GLMMs with possible extremes

ecology extremes r spatial-analysis spatiotemporal

Last synced: 16 Nov 2024

https://github.com/ecojulia/microbiome.jl

For analysis of microbiome and microbial community data

biology ecology julia-language microbiome

Last synced: 12 Oct 2024

https://github.com/lter/lterdatasampler

LTER data samples to teach environmental data science

data-science ecology lter-science r r-package

Last synced: 27 Oct 2024

https://github.com/bmaitner/RBIEN

Tools for accessing the Botanical Information and Ecology Network (BIEN) database

bien biodiversity botanical ecology open-science phylogeny plant r range-maps traits

Last synced: 14 Nov 2024

https://github.com/bencevans/camtrap-detector

Detect Animals, Humans and Vehicles in Camera Trap Imagery. Powered by MegaDetector v5.

ai4good camera-traps conservation ecology hacktoberfest megadetector neural-network tauri-app

Last synced: 26 Oct 2024

https://github.com/forestgeo/fgeo

[Meta R-package on CRAN] Analyse forest diversity and dynamics

abundance demography dynamic dynamics ecology fgeo forestgeo forests habitat metapackage tree

Last synced: 14 Nov 2024

https://github.com/MoBiodiv/mobr

Tools for analyzing changes in diversity across scales

biodiversity conservation ecology rarefaction species statistics

Last synced: 14 Nov 2024

https://github.com/mbjoseph/neuralecology

Code for the paper "Neural hierarchical models of ecological populations"

bayesian deep-learning ecology hierarchical-model occupancy research-compendium science-based-deep-learning

Last synced: 11 Nov 2024

https://github.com/femiguez/nlraa

Nonlinear Regression for Agricultural Applications

agricultural ecology nonlinear-mixed-models nonlinear-regression r

Last synced: 30 Oct 2024

https://github.com/gottacatchenall/metacommunitydynamics.jl

population and community dynamics on spatial graphs, in julia. (formerly EcoDynamics.jl)

community-ecology dynamics ecojulia ecology julia landscape-ecology macroecology simulation spatial-ecology

Last synced: 28 Oct 2024

https://github.com/PoisotLab/GBIF.jl

Functions and types to access GBIF data from Julia

api biogeography ecology gbif julia macroecology

Last synced: 09 Nov 2024

https://github.com/kabachuha/minecraftecologymod

Mod, that adds pollution and climate changing system to Minecraft

ecology minecraft minecraft-forge-mod mod pollution pollution-effects pollution-sources

Last synced: 10 Oct 2024

https://github.com/boyanangelov/sdmbench

Benchmarking Species Distribution Models

benchmarking ecology machine-learning r sdm

Last synced: 25 Oct 2024

https://github.com/rekyt/funrar

:package: R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)

ecological-models ecology r r-package rarity traits

Last synced: 28 Oct 2024

https://github.com/suburbanno/ecoleta

♻️ Aplicação web para coleta de resíduos de forma eficiente.

css ecology html js marketplace nextlevelweek rocketseat

Last synced: 13 Oct 2024

https://github.com/Rekyt/funrar

:package: R package to compute functional rarity indices (functional distinctiveness, uniqueness, restrictedness, scarcity)

ecological-models ecology r r-package rarity traits

Last synced: 14 Nov 2024

https://github.com/FranckKe/mersea

Web app to manage and visualise geolocalized waste report

cartography ecology environmental mapbox-gl-js rails vue

Last synced: 19 Nov 2024

https://github.com/cont-limno/LAGOSNE

Interface to the LAke multi-scaled GeOSpatial & temporal database :earth_americas:

cran ecology geoscience limnology rstats water-quality

Last synced: 27 Nov 2024

https://github.com/ltrr-arizona-edu/burnr

🔥 Forest fire history analysis in R.

citation cran dendrochronology ecology forestfire plot r scientific statistics

Last synced: 08 Nov 2024

https://github.com/geopjr/co2

A GitHub action that notifies you about your website's carbon emissions and gives you some fun facts about it

actions carbon-emissions ci co2 ecology planet renewable-energy

Last synced: 23 Oct 2024

https://github.com/spatial-ews/spatialwarnings

An R package to compute spatial early-warning signals of ecosystem degradation

catastrophic critical ecology indicators points r shifts space transitions

Last synced: 10 Oct 2024

https://github.com/DiversiTree/TreeDiversity

Notebooks to calculate tree diversity indices (Shannon and Simpson) for planners, foresters, and ecologists!

ecology forestry urban-planning

Last synced: 14 Nov 2024

https://github.com/AquaticEcoDynamics/libaed2

Code for the AED2 water quality / ecology library

aem aquatic ecology estuaries lakes nutrients phytoplankton quality sediment water

Last synced: 27 Nov 2024

https://github.com/MindsHub/insigno_frontend

Insigno makes keeping your city clean enjoyable and inspiring!

ecology trash

Last synced: 09 Nov 2024

https://github.com/regime-shifts/abrupt

Methods for detecting abrupt change in temporal, spatial, and spatiotemporal data series

abrupt-change ecology r r-package regime-shifts

Last synced: 04 Dec 2024

https://github.com/drmattg/recol-verse

A list of R packages that are focused on Ecology

ecology packages rstats

Last synced: 07 Dec 2024

https://github.com/forestobservatory/cfo-api

Python wrappers for accessing Forest Observatory data via the Salo API

api california ecology python-wrappers wildfire

Last synced: 14 Nov 2024

https://github.com/weecology/portalr

A collection of functions to summarize the Portal Data

community-ecology ecology small-mammal-trapping

Last synced: 04 Dec 2024

https://github.com/ali-ramadhan/lagrangian-microbes

🦐🐟🦈 A framework for simulating millions of interacting Lagrangian particles (or microbes!) in a turbulent ocean.

biological-simulations ecology ocean particle-simulation

Last synced: 17 Oct 2024

https://github.com/zhmiao/iterative-human-and-automated-identification-of-wildlife-images

Pytorch implementation for "Iterative Human and Automated Identification of Wildlife Images" (Nature -Machine Intelligence, 2021)

active-learning computer-vision conservation deep-learning ecology humans-in-the-loop lifelong-learning wildlife wildlife-conservation

Last synced: 12 Oct 2024

https://github.com/arcology-builders/arcology-website

The website for Arcology Builders, a project for a, a sustainable community home in Detroit.

architecture builders community-land construction-company detroit ecology sustainability

Last synced: 17 Jan 2025

https://github.com/mbjoseph/wildfire-extremes

Spatiotemporal modeling of wildfire extremes

bayesian ecology fire research-compendium stan

Last synced: 08 Jan 2025

https://github.com/Arcology-Builders/arcology-website

The website for Arcology Builders, a project for a, a sustainable community home in Detroit.

architecture builders community-land construction-company detroit ecology sustainability

Last synced: 26 Nov 2024

https://github.com/mmkim1210/arrakis.jl

🏜️🪨 🐛👳🧕🏻🗡🌏🌞🌕🐭More ⊃⋃⋂⪽ and milly rock for your headtop

dune ecology frank-herbert leadership lore religion spice

Last synced: 23 Dec 2024

https://github.com/cboettig/neonstore

:package: A local content-based storage system for NEON data

database ecology neon-data provenance r

Last synced: 27 Oct 2024

https://github.com/osu-cascades/ecotone-web

Monitoring native plants & biodiversity at OSU Cascades.

ecology osu-cascades plants rails5

Last synced: 20 Jan 2025

https://github.com/weecology/portalcasting

Model development, deployment, and evaluation for forecasting Portal ecosystem dynamics

ecology forecasting portal r r-package r-stats reproducible-research shiny workflow

Last synced: 14 Nov 2024

https://github.com/psolymos/resourceselection

Resource Selection (Probability) Functions for Use-Availability Data in R

cran ecology estimation lele r rsf rspf solymos weighted-distributions

Last synced: 31 Oct 2024

https://github.com/wangl-cc/evolutionarymodelingtools.jl

Simulate evolutionary biology models with Gillespie algorithm.

ecology evolution evolutionary-dynamics gillespie-algorithm julia simulation

Last synced: 19 Nov 2024

https://github.com/cran-task-views/environmetrics

CRAN Task View: Analysis of Ecological and Environmental Data

cran ecology environmetrics r rstats task-views

Last synced: 27 Nov 2024

https://github.com/seananderson/spatial-extremes

Code for 'Black swans in space: modelling spatiotemporal processes with extremes'

ecology r spatial-analysis

Last synced: 09 Nov 2024

https://github.com/metasoarous/odum

Program for running simulations on Odum graphs

clojurescript datascript ecology ecology-modelling

Last synced: 12 Oct 2024

https://github.com/sckott/gbifrb

GBIF Ruby client; docs: http://www.rubydoc.info/gems/gbifrb/0.1.0

biodiversity data ecology gbif gbif-api

Last synced: 08 Nov 2024

https://github.com/sciviews/pastecs

Regularisation, decomposition and analysis of space-time ecological series

ecology r time-series

Last synced: 24 Nov 2024

https://github.com/ecojulia/metapopulationdynamics.jl

Population dynamics across space, in Julia.

ecology evolution spatial-simulation

Last synced: 12 Jan 2025

https://github.com/jmlondon/crawl-workshop

slides, data, code and a book in support of workshops at AFSC and SWFSC for the R package `crawl`

afsc-mml animal-movement ecology statistics telemetry-data

Last synced: 24 Dec 2024

https://github.com/ecodynizw/ecodynizw.github.io

We are the Department of Ecological Dynamics of the Leibniz IZW! This repository stores the distill webpage of the department.

community-dynamics disease-modeling diseases ecology ecology-modelling population-dynamics

Last synced: 26 Dec 2024

https://github.com/nfroidure/politics

My political blog

blog ecology politics

Last synced: 08 Nov 2024

https://github.com/oceanstreamio/oceanstream

Oceanstream is a Python library which can be used as a CLI tool to process raw acoustic data from echosounders. It uses echopype as a backend. Developed at @pineviewlabs

acoustics echopype echosounder ecology netcdf oceanography sonar underwater-acoustics zarr

Last synced: 05 Nov 2024

https://github.com/brews/burnr_2018_manuscript_figures

Figures and code for the 2018 paper "burnr: Fire history analysis and graphics in R"

dendrochronology ecology fire forest paper r rstats statistics visualization

Last synced: 08 Dec 2024

https://github.com/petercollingridge/bloops

A simple ecosystem evolution simulation

ecology evolution javascript python

Last synced: 30 Dec 2024

https://github.com/alexeyev/hogweed-ground-level-view

A dataset for semantic segmentation of Sosnowsky's hogweed in the ground-level view photos taken in St. Petersburg, Malaya Vishera, Pushkin, etc.

agtech coco-format computer-vision data dataset ecology plant-detection robotic-vision semantic-segmentation

Last synced: 08 Jan 2025