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ImageJ
ImageJ is an open source Java image processing program inspired by NIH Image. It runs on any computer with a Java 1.8 or later virtual machine. Downloadable distributions are available for Windows, Mac OS X and Linux. ImageJ has a strong, established user base, with thousands of plugins and macros for performing a wide variety of tasks.
Fiji is a “batteries-included” distribution of ImageJ, bundling many plugins which facilitate scientific image analysis.
- GitHub: https://github.com/topics/imagej
- Wikipedia: https://en.wikipedia.org/wiki/ImageJ
- Repo: https://github.com/imagej/imagej
- Aliases: fiji, fiji-plugin,
- Last updated: 2024-07-29 13:44:39 UTC
- JSON Representation
https://github.com/Image-Py/imagepy
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
imagej opencv scikit-image simpleitk
Last synced: 30 Jul 2024
https://github.com/qupath/qupath
QuPath - Bioimage analysis & digital pathology
bioimage-analysis bioimage-informatics cell-analysis cell-segmentation computational-pathology digital-pathology groovy histology image-processing imagej javafx machine-learning opencv pathology tissue-microarray-analysis whole-slide-imaging
Last synced: 30 Jul 2024
https://github.com/cgohlke/tifffile
Read and write TIFF files
format-reader image imagej life-sciences-image numpy ome-tiff python tiff whole-slide-imaging zarr
Last synced: 01 Aug 2024
https://github.com/ijpb/MorphoLibJ
Collection of mathematical morphology methods and plugins for ImageJ
3d-images fiji image-analysis image-processing imagej mathematical-morphology morpholibj
Last synced: 03 Aug 2024
https://github.com/gtatters/ThermImageJ
ImageJ functions and macros for working with thermal image files
exiftool ffmpeg fiji fiji-macro heat-transfer imagej imagej-macro perl temperature-reading thermal-imaging
Last synced: 03 Aug 2024
https://github.com/morphonets/SNT
The ImageJ framework for quantification of neuronal anatomy
imagej imagej2 janelia neuroanatomy-toolbox neurons neuroscience scijava
Last synced: 03 Aug 2024
https://github.com/bockp/Edge-Detection-project
Tiny Image in Javascript - Edge Detection Algorithms
algorithm benchmark canny-edge-detection edge-detection edge-detection-algorithms imagej javascript laplace sobel webgl
Last synced: 04 Aug 2024
https://github.com/flika-org/flika
An interactive image processing program for biologists written in Python.
astrocytes biologists calcium fluorescence image-processing imagej microscopy neurons python
Last synced: 03 Aug 2024
https://github.com/ij-plugins/ijp-color
Plugins for ImageJ - color space conversions and color calibration
ijp-color imagej sbt-imagej scala
Last synced: 03 Aug 2024
https://github.com/UU-cellbiology/ZstackDepthColorCode
Z-stack Depth Colorcode ImageJ FIJI plugin
colorcode fiji fiji-plugin imagej imagej-plugin microscopy utrecht-university
Last synced: 03 Aug 2024
https://github.com/bonej-org/BoneJ2
Plugins for bone image analysis
fiji-plugin image-analysis image-processing imagej imagej-plugins java-8 maven-multimodule scientific-computing skeletal-biology travis-ci
Last synced: 03 Aug 2024
https://github.com/emx77/ASI_MTF
Imagej macro to calculate the MTF based on a knife edge measurement
electron-microscopy image-analysis imagej imagej-macro imagej-plugins mtf point-spread-function x-ray-imaging
Last synced: 03 Aug 2024
https://github.com/lukmuk/em-scalebartools
Fiji/ImageJ macros to quickly add a scale bar to an (electron microscopy) image.
electron-microscopy fiji imagej scalebar
Last synced: 03 Aug 2024
https://github.com/mianalysis/mia
Modular, object-based analysis for ImageJ/Fiji
fiji-plugin image-analysis image-processing imagej modular
Last synced: 03 Aug 2024
https://github.com/spatialsimulator/XitoSBML
XitoSBML - the spatial SBML plugin for ImageJ
fiji imagej sbml spatial-sbml-plugin systems-biology
Last synced: 03 Aug 2024
https://github.com/quantixed/CellMigration
Analysis of cell migration in Igor Pro
cell-migration igor imagej tracking
Last synced: 03 Aug 2024
https://github.com/CellDynamics/QuimP
QuimP is software for tracking cellular shape changes and dynamic distributions of fluorescent reporters at the cell membrane.
cell imagej motility segmentation
Last synced: 03 Aug 2024
