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top-life-sciences

Top Life Sciences open-source software
https://github.com/servierhub/top-life-sciences

Last synced: 4 days ago
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  • Ranked by starred repositories

    • **google-deepmind/alphafold** - 2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-04-05 09:45:53 |
    • **deepchem/deepchem** - Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology<br>`biology`, `deep-learning`, `drug-discovery`, `hacktoberfest`, `materials-science`, `quantum-chemistry`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 5220 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 1626 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-08 13:03:11 |
    • **biopython/biopython** - structure`, `python`, `sequence-alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 4213 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 1728 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 168 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Unknown LICENSE |
    • **google/deepvariant** - generation DNA sequencing data.<br>`bioinformatics`, `deep-learning`, `deep-neural-network`, `deepvariant`, `dna`, `genome`, `genomics`, `machine-learning`, `ngs`, `science`, `sequencing`, `tensorflow`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 3100 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 698 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 159 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD-3-Clause license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-03-19 19:20:10 |
    • **facebookresearch/esm** - 10-18 13:38:47 |
    • **aqlaboratory/openfold** - efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2<br>`alphafold2`, `protein-structure`, `pytorch`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 2572 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 466 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-04 08:33:28 |
    • **rdkit/rdkit** - plus-plus`, `cheminformatics`, `python`, `rdkit`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 2483 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 845 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> HTML <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-08 03:18:22 |
    • **AstraZeneca/awesome-explainable-graph-reasoning** - list`, `deep-learning`, `explainable-ai`, `explainable-ml`, `graph`, `graph-algorithms`, `graphml`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1941 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 129 <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-04-04 14:54:08 |
    • **OpenGene/fastp** - fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)<br>`adapter`, `bioinformatics`, `duplication`, `fastq`, `filter`, `filtering`, `illumina`, `merging`, `ngs`, `overlap`, `polyg`, `preprocessing`, `qc`, `quality`, `quality-control`, `sequencing`, `splitting`, `trimming`, `umi`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1803 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 333 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-07 08:16:11 |
    • **scverse/scanpy** - cell analysis in Python. Scales to &gt;1M cells.<br>`anndata`, `bioinformatics`, `data-science`, `machine-learning`, `python`, `scanpy`, `scverse`, `transcriptomics`, `visualize-data`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1789 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 579 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 08:43:34 |
    • **lh3/minimap2** - alignment`, `spliced-alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1708 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 396 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-22 19:58:33 |
    • **allenai/scispacy** - pipes`, `nlp`, `scientific-documents`, `spacy`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1629 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 221 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 52 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache-2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-03-08 05:57:56 |
    • **broadinstitute/gatk** - 12-13 22:53:56 |
    • **bioconda/bioconda-recipes** - management`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1595 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 3089 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 96 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Shell <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license |
    • **samtools/samtools** - generation sequencing data<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1572 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 572 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 09:32:59 |
    • **Slicer/Slicer** - platform, free open source software for visualization and image computing.<br>`3d-printing`, `3d-slicer`, `c-plus-plus`, `computed-tomography`, `image-guided-therapy`, `image-processing`, `itk`, `kitware`, `medical-image-computing`, `medical-imaging`, `national-institutes-of-health`, `neuroimaging`, `nih`, `python`, `qt`, `registration`, `segmentation`, `tcia-dac`, `tractography`, `vtk`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1521 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 520 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 38 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific |
    • **lh3/bwa** - Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)<br>`bioinformatics`, `fm-index`, `genomics`, `sequence-alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1468 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 547 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-15 02:54:32 |
    • **DeepGraphLearning/torchdrug** - learning`, `drug-discovery`, `graph-neural-networks`, `pytorch`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1407 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 194 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 31 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache-2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-07-16 22:37:17 |
    • **lh3/seqtk** - analysis`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1332 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 310 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-10-24 15:01:39 |
    • **galaxyproject/galaxy** - engine`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1329 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 967 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 69 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-07 13:56:26 |
    • **schrodinger/fixed-data-table-2** - 05-23 05:13:10 |
    • **soedinglab/MMseqs2** - search`, `sequence-clustering`, `sequence-search`, `taxonomy`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1281 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 181 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-23 07:07:21 |
    • **facebookresearch/fastMRI** - scale dataset of both raw MRI measurements and clinical MRI images.<br>`convolutional-neural-networks`, `deep-learning`, `fastmri`, `fastmri-challenge`, `fastmri-dataset`, `medical-imaging`, `mri`, `mri-reconstruction`, `pytorch`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1259 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 370 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 74 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-06-26 17:17:06 |
    • **greenelab/deep-review** - learning`, `genomics`, `manubot`, `manuscript`, `neural-networks`, `review`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1235 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 271 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 129 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> HTML <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Unknown LICENSE.md <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2018-03-12 15:06:48 |
    • **shenwei356/seqkit** - platform and ultrafast toolkit for FASTA/Q file manipulation<br>`bioinformatics`, `cross-platform`, `fasta`, `fastq`, `golang`, `manipulation`, `sequence`, `tool`, `toolkit`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1226 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 157 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 26 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-17 15:59:35 |
    • **MultiQC/MultiQC** - visualization`, `multiqc`, `pypi`, `python`, `quality-control`, `reporting`, `seqera`, `vizualisation`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1185 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 582 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 37 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> JavaScript <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GPL-3.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-31 18:30:12 |
    • **dcm4che/dcm4che** - 04-22 10:59:11 |
    • **scverse/scvi-tools** - cell and spatial omics data<br>`cite-seq`, `deep-generative-model`, `deep-learning`, `human-cell-atlas`, `scrna-seq`, `scverse`, `single-cell-genomics`, `single-cell-rna-seq`, `variational-autoencoder`, `variational-bayes`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1149 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 342 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-05 17:01:13 |
    • **vgteam/vg** - graph`, `genomics`, `graph`, `variation-graph`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1072 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 191 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 48 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-20 18:50:28 |
    • **schrodinger/pymol-open-source** - source foundation of the user-sponsored PyMOL molecular visualization system.<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1071 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 260 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 19:36:48 |
    • **scipipe/scipipe** - efficient pipelines using Go and the commandline<br>`bioinformatics`, `bioinformatics-pipeline`, `cheminformatics`, `dataflow`, `fbp`, `go`, `golang`, `pipeline`, `scientific-workflows`, `scipipe`, `workflow`, `workflow-engine`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 1055 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 72 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 38 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2021-10-14 09:11:34 |
    • **shenwei356/csvtk** - platform, efficient and practical CSV/TSV toolkit in Golang<br>`bioinformatics`, `command-line`, `cross-platform`, `csv`, `golang`, `tool`, `toolkit`, `tsv`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 972 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 85 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 25 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-29 15:30:38 |
    • **bigdatagenomics/adam** - data`, `bioinformatics`, `genomics`, `java`, `parquet`, `python`, `r`, `scala`, `spark`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 967 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 304 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Scala <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-03-23 13:27:52 |
    • **broadinstitute/cromwell** - description-language`, `workflow-execution`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 965 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 351 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 112 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Scala <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD-3-Clause LICENSE.txt <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-07 17:47:13 |
    • **hail-is/hail** - native genomic dataframes and batch computing<br>`bioinformatics`, `genetics`, `genomics`, `gwas`, `hail`, `python`, `software`, `vcf`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 946 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 238 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 55 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-05 17:48:05 |
    • **broadinstitute/picard** - throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 944 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 365 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 160 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Java <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-11-14 22:01:18 |
    • **aqlaboratory/proteinnet** - learning`, `machine-learning`, `protein-sequence`, `protein-structure`, `proteins`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 849 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 130 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2020-11-18 23:43:32 |
    • **shenwei356/rush** - platform command-line tool for executing jobs in parallel<br>`bioinformatics`, `command`, `cross-platform`, `execute`, `golang`, `parallel`, `pipeline`, `shell`, `windows`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 834 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 63 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 20 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-11-13 17:53:58 |
    • **evo-design/evo** - 04-30 22:35:34 |
    • **PaddlePaddle/PaddleHelix** - Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集<br>`biocomputing`, `ddi`, `deeplearning`, `dti`, `graph-networks`, `machine-learning`, `molecule-design`, `ppi`, `protein-design`, `protein-docking`, `protein-folding`, `protein-structure-prediction`, `representation-learning`, `rna-structure-prediction`, `self-supervised-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 799 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 188 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 25 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache-2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-08-01 09:31:36 |
    • **samtools/htslib** - throughput sequencing data formats<br>`bam`, `bcf`, `bioinformatics`, `cram`, `htslib`, `ngs`, `sam`, `vcf`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 779 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 448 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 15:40:15 |
    • **google/nucleus** - 08-31 23:19:33 |
    • **nroduit/Weasis** - based application.<br>`dicom`, `dicom-image`, `dicom-image-viewer`, `dicom-images`, `dicom-pr`, `dicom-rt`, `dicom-seg`, `dicom-viewer`, `dicom-web-viewer`, `dicomweb`, `ecg`, `export-dicom`, `medical`, `medical-imaging`, `multiplanar-reconstruction`, `viewer`, `volume-rendering`, `weasis`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 763 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 281 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 49 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Java <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-06 18:42:54 |
    • **baidu-research/NCRF** - random-fields`, `deep-learning`, `pathology`, `whole-slide-imaging`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 749 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 184 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 37 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache-2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2018-06-17 18:22:34 |
    • **AstraZeneca/chemicalx** - chemistry`, `deep-learning`, `drug`, `drug-discovery`, `drug-interaction`, `drug-pair`, `geometric-deep-learning`, `geometry`, `graph-neural-network`, `machine-learning`, `pharma`, `polypharmacy`, `pytorch`, `smiles`, `smiles-strings`, `torch`, `torchdrug`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 701 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 89 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-09-11 08:01:43 |
    • **samtools/hts-specs** - throughput sequencing file formats<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 627 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 173 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> TeX <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 06:50:26 |
    • **samtools/bcftools** - 06-07 13:13:17 |
    • **insilicomedicine/GENTRL** - 04-28 11:58:05 |
    • **shenwei356/awesome** - science`, `git`, `golang`, `linux`, `perl`, `programing-language`, `python`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 593 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 163 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 35 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-09-25 02:09:01 |
    • **chanzuckerberg/cellxgene** - cell transcriptomics data<br>`dataviz`, `scientific`, `scrna-seq`, `transcriptomics`, `visualization`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 591 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 111 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 33 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> JavaScript <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-12-19 22:19:07 |
    • **invesalius/invesalius3** - 2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-04-14 02:28:31 |
    • **lh3/bioawk** - analysis`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 582 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 121 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-08-11 01:06:45 |
    • **MolecularAI/aizynthfinder** - reactions`, `cheminformatics`, `monte-carlo-tree-search`, `neural-networks`, `reaction-informatics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 548 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 125 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-03 13:34:33 |
    • **owkin/PyDESeq2** - seq DEA.<br>`bioinformatics`, `differential-expression`, `python`, `rna-seq`, `transcriptomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 533 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 58 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 01:43:52 |
    • **broadinstitute/infercnv** - Cell RNA-Seq<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 520 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 159 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 42 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2020-02-07 20:29:28 |
    • **scverse/anndata** - science`, `machine-learning`, `scanpy`, `scverse`, `transcriptomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 511 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 148 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 16:03:50 |
    • **soedinglab/hh-suite** - suite`, `hhblits`, `hhpred`, `hhsearch`, `opensource`, `profile-profile-search`, `profile-search`, `protein-structure`, `sequence-search`, `simd`, `viterbi`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 509 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 128 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-08-13 08:44:05 |
    • **chhylp123/hifiasm** - resolved assembler for accurate Hifi reads<br>`bioinformatics`, `denovo-assembly`, `genomics`, `hifi-read`, `pacbio`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 490 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 84 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 28 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-06 14:29:45 |
    • **insitro/redun** - engineering`, `data-science`, `docker`, `etl`, `gcp`, `ml`, `python`, `workflow-engine`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 489 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 40 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 18:52:56 |
    • **biosustain/potion** - Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine<br>`flask`, `flask-extensions`, `mongoengine`, `peewee`, `sqlalchemy`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 488 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 51 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2019-04-23 17:00:39 |
    • **google-deepmind/alphamissense** - 2.0 license |
    • **scverse/squidpy** - visualization`, `image-analysis`, `single-cell-genomics`, `single-cell-rna-seq`, `spatial-analysis`, `spatial-transcriptomics`, `squidpy`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 399 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 71 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-08 21:22:47 |
    • **lh3/minigraph** - to-graph mapper and graph generator<br>`bioinformatics`, `genome-graph`, `genomics`, `pan-genome`, `sequence-alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 394 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 38 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-22 00:59:12 |
    • **benevolentAI/guacamol** - 02-11 08:59:38 |
    • **calico/basenji** - 05-28 20:08:23 |
    • **ome/bioformats** - Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.<br>`bio-formats`, `format-converter`, `format-reader`, `image`, `java`, `life-sciences-image`, `lightsheet`, `metadata`, `whole-slide-imaging`, `wsi`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 367 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 239 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Java <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 19:34:33 |
    • **MolecularAI/GraphINVENT** - 03-11 11:55:32 |
    • **chembl/chembl_webresource_client** - client`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 356 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 95 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-26 15:44:57 |
    • **shenwei356/taxonkit** - style taxdump files for custom taxonomies like GTDB/ICTV<br>`bioinformatics`, `cross-platform`, `lca`, `lineage`, `taxdump`, `taxid`, `taxonkit`, `taxonomy`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 342 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 29 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-25 17:15:34 |
    • **deepchem/DeepLearningLifeSciences** - 09-17 05:10:37 |
    • **MolecularAI/Reinvent** - design`, `neural-networks`, `reinforcement-learning`, `transfer-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 332 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 108 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-10-19 05:26:16 |
    • **aqlaboratory/rgn** - to-end differentiable learning of protein structure<br>`deep-learning`, `deep-neural-networks`, `protein-structure`, `protein-structure-prediction`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 326 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 89 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2019-08-01 14:17:59 |
    • **tencent-ailab/grover** - Supervised Graph Transformer on Large-Scale Molecular Data<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 313 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 68 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 7 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2021-01-18 09:06:32 |
    • **lh3/miniprot** - alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 305 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 16 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-12 21:01:25 |
    • **Roche/pyreadstat** - dataframe`, `python`, `readstat`, `sas7bdat`, `spss`, `stata-files`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 303 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 55 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-04 09:55:07 |
    • **lh3/miniasm** - assembly`, `genomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 293 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 68 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> TeX <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-12-13 01:35:58 |
    • **chanzuckerberg/MedMentions**
    • **AstraZeneca/rexmex** - learning`, `evaluation`, `machine-learning`, `metric`, `metrics`, `mrr`, `personalization`, `precision`, `rank`, `ranking`, `recall`, `recommender`, `recommender-system`, `recsys`, `rsquared`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 275 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 25 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-08-22 09:22:20 |
    • **samtools/htsjdk** - throughput sequencing data (HTS) formats.<br>`bam`, `cram`, `dna`, `fasta`, `genomics`, `java`, `java-api`, `ngs`, `sam`, `sequencing`, `vcf`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 274 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 244 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Java <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-04 18:40:43 |
    • **shenwei356/brename** - platform command-line tool for safely batch renaming files/directories via regular expression<br>`batch`, `batch-rename`, `batch-rename-files`, `batch-renamer`, `go`, `golang`, `rename`, `safe`, `windows`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 254 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 21 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 6 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-14 08:22:45 |
    • **lh3/wgsim** - 09-03 14:58:22 |
    • **Acellera/htmd** - discovery`, `htmd`, `molecular-simulations`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 250 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 58 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Rich Text Format <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 15:24:26 |
    • **DeepGraphLearning/GearNet** - neural-networks`, `pre-training`, `protein-representation-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 249 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 26 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license |
    • **MolecularAI/REINVENT4** - group replacement, linker design and molecule optimization.<br>`ai`, `astrazeneca`, `cheminformatics`, `chemistry`, `deep-learning`, `denovo-design`, `drug-design`, `drug-discovery`, `generative-ai`, `ml`, `molecule-generation`, `neural-networks`, `reinforcement-learning`, `transfer-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 247 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 57 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-27 11:00:08 |
    • **rdkit/rdkit-tutorials** - 03-19 13:36:55 |
    • **insightsengineering/rtables** - 06-07 21:27:39 |
    • **Bayer-Group/cloudformation-template-generator** - safe Scala DSL for generating CloudFormation templates<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 211 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 71 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Scala <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-07-29 11:32:04 |
    • **pharmaverse/admiral** - trials`, `open-source`, `r`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 207 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 53 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 18:23:44 |
    • **OpenGene/awesome-bio-datasets** - bio-datasets<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 207 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 42 <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2017-10-28 12:32:15 |
    • **OpenGene/AfterQC** - trimming`, `bioinformatics`, `error`, `fastq`, `filtering`, `ngs`, `overlap`, `qc`, `quality-control`, `sequencing`, `trimming`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 203 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 50 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2020-05-14 07:15:54 |
    • **Bayer-Group/etcd-aws-cluster** - Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2017-02-01 01:09:05 |
    • **modernatx/seqlike** - sequences`, `biopython`, `machine-learning`, `sequence`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 202 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 18 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-16 13:13:05 |
    • **scverse/scirpy** - cell TCR and BCR data.<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 202 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 31 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 06:21:35 |
    • **lh3/gfatools** - graph`, `genomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 201 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 18 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-20 15:29:14 |
    • **scverse/muon** - seq`, `mudata`, `multi-omics`, `multimodal-data`, `multimodal-omics-analysis`, `muon`, `scanpy`, `scatac-seq`, `scrna-seq`, `scverse`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 201 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 28 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-30 21:21:35 |
    • **aws-samples/aws-batch-genomics** - 2.0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2018-11-29 18:40:42 |
    • **rdkit/mmpdb** - 04-30 10:55:30 |
    • **Acellera/moleculekit** - discovery`, `machine-learning`, `molecular-modeling`, `molecular-simulation`, `molecule`, `proteins`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 193 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 35 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-04 13:53:30 |
    • **bioinform/somaticseq** - genomics`, `somatic-variants`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 189 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 53 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 2-Clause "Simplified" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-30 07:55:34 |
    • **MolecularAI/Chemformer** - 05-29 14:43:33 |
    • **owkin/FLamby** - silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.<br>`dataset`, `deep-learning`, `differential-privacy`, `federated-learning`, `healthcare`, `machine-learning`, `python`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 187 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 22 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-03 12:18:27 |
    • **ome/openmicroscopy** - source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded …<br>`database`, `image`, `java`, `omero`, `python`, `server`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 187 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 100 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Java <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-08 00:39:30 |
    • **AstraZeneca-NGS/VarDict** - 01-05 14:06:13 |
    • **scverse/spatialdata** - Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-08 00:23:48 |
    • **haowenz/chromap** - profiles`, `genomics`, `sequence-analysis`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 184 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 18 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 7 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-06 15:29:20 |
    • **chao1224/MoleculeSTM** - modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2023 (https://www.nature.com/articles/s42256-023-00759-6)<br>`clip`, `computation-chemistry`, `drug-discovery`, `editing`, `foundation-model`, `molecule-editing`, `moleculeclip`, `moleculestm`, `pretraining`, `retrieval`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 182 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 17 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 4 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-19 05:25:24 |
    • **openpharma/visR** - 06-04 13:48:59 |
    • **chembl/ChEMBL_Structure_Pipeline** - 10-25 15:20:47 |
    • **AstraZeneca/awesome-drug-discovery-knowledge-graphs** - list`, `drug-discovery`, `drug-discovery-knowledge-graph`, `knowledge-graph`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 177 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 19 <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-09-10 16:33:40 |
    • **lh3/biofast** - 12-09 14:10:44 |
    • **shenwei356/kmcp** - scale sequence/genome searching<br>`bigsi`, `cobs`, `fracminhash`, `kmer`, `metagenomics`, `scaled-minhash`, `searching`, `sketch`, `sketching`, `syncmers`, `taxonomic-classification`, `taxonomic-profiling`, `virome`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 173 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 13 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 6 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-09-22 04:09:54 |
    • **rgcgithub/regenie** - wide association studies.<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 172 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 49 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-03 13:52:31 |
    • **soedinglab/metaeuk** - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics<br>`bioinformatics`, `eukaryotes`, `gene-discovery`, `gene-prediction`, `metagenomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 171 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 24 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-30 09:04:06 |
    • **recursionpharma/gflownet** - learning`, `gflownet`, `graph-neural-network`, `pytorch`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 168 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 34 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 13:29:06 |
    • **scverse/scanpy-tutorials** - 06-03 19:42:01 |
    • **bioinform/neusomatic** - neural-networks`, `deep-learning`, `genomics`, `somatic-variants`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 167 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 50 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2021-12-23 10:41:50 |
    • **lh3/readfq** - line FASTA/Q reader in several programming languages<br>`bioinformatics`, `sequence-analysis`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 166 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 60 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2021-06-06 07:27:15 |
    • **insightsengineering/teal** - trials`, `nest`, `r`, `shiny`, `webapp`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 164 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 29 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-07 12:49:26 |
    • **lh3/cgranges** - 05-28 21:47:37 |
    • **lh3/kmer-cnt** - mer counters for tutorial purposes<br>`bioinformatics`, `genomics`, `k-mer-counting`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 161 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 13 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2020-03-10 16:24:06 |
    • **greenelab/tybalt** - cancer gene expression data<br>`analysis`, `autoencoder`, `cancer`, `cancer-genomics`, `deep-learning`, `gene-expression`, `script`, `tool`, `unsupervised-learning`, `variational-autoencoder`, `variational-autoencoders`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 159 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 62 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> HTML <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD-3-Clause license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2017-11-13 13:38:42 |
    • **aqlaboratory/genie** - models`, `protein-design`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 154 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 18 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-21 13:48:25 |
    • **DeepGraphLearning/ConfGF**
    • **benevolentAI/DeeplyTough** - models`, `deep-learning`, `drug-discovery`, `metric-learning`, `protein-structure`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 151 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 39 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-04-07 09:33:44 |
    • **chao1224/GraphMVP** - training Molecular Graph Representation with 3D Geometry, ICLR'22 (https://openreview.net/forum?id=xQUe1pOKPam)<br>`contrastive-learning`, `generative-model`, `geometry`, `graph`, `molecule`, `pretraining`, `self-supervised`, `self-supervised-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 150 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 20 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 5 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-09-20 14:29:48 |
    • **OpenGene/MutScan** - 02-10 01:52:44 |
    • **MolecularAI/ReinventCommunity** - design`, `jupyter-notebook`, `neural-networks`, `reinforcement-learning`, `transfer-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 145 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 57 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Jupyter Notebook <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-04-22 16:44:35 |
    • **lh3/psmc** - genetics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 145 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 60 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-11-21 04:39:31 |
    • **tencent-ailab/DrugOOD** - aided Drug Discovery<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 145 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 19 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 6 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> specific |
    • **ome/ome-zarr-py** - generation file format (NGFF) specifications for storing bioimaging data in the cloud.<br>`ngff`, `ome`, `ome-zarr`, `zarr`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 143 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 51 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-06 12:51:57 |
    • **Novartis/tidymodules** - Oriented approach to Shiny modules<br>`communication`, `inheritance`, `oop`, `r`, `shiny`, `shiny-modules`, `tidy-operators`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 141 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 11 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-02-23 15:04:31 |
    • **aws-samples/aws-genomics-workflows** - functions`, `workflows`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 140 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 106 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 19 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Shell <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT-0 license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-03-30 21:38:09 |
    • **MolecularAI/deep-molecular-optimization** - optimization`, `multi-property-optimization`, `seq2seq`, `transformer`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 139 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 36 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-03-16 07:05:06 |
    • **AstraZeneca/SubTab** - Supervised Representation Learning"<br>`contrastive-learning`, `multi-view-learning`, `representation-learning`, `self-supervised-learning`, `tabular-data`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 138 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 20 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-07-01 09:03:38 |
    • **johnsonandjohnson/Bodiless-JS** - 01-24 03:00:32 |
    • **Benson-Genomics-Lab/TRF** - 01-16 20:44:26 |
    • **lh3/pangene** - 05-29 00:13:01 |
    • **owkin/HistoSSLscaling** - supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀<br>`computational-pathology`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 135 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 11 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Jupyter Notebook <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-01-29 22:35:32 |
    • **AstraZeneca/awesome-shapley-value** - intelligence`, `data-science`, `deep-learning`, `explainability`, `explainable`, `explainable-ai`, `explainable-artificial-intelligence`, `explainable-ml`, `lime`, `machine-learning`, `owen-value`, `shap`, `shapley`, `shapley-additive-explanations`, `shapley-decomposition`, `shapley-q-value`, `shapley-value`, `xai`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 134 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-08-08 08:53:10 |
    • **lh3/bedtk** - 05-28 21:48:28 |
    • **Bioconductor/Contributions** - 09-12 18:32:10 |
    • **Merck/BioPhi** - source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.<br>`antibody`, `humanization`, `humanness`, `oasis`, `sapiens`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 129 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 44 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-03 07:17:18 |
    • **soedinglab/plass** - assembler`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 129 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 14 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-16 20:44:12 |
    • **benevolentAI/guacamol_baselines** - 02-16 09:40:42 |
    • **AstraZeneca-NGS/VarDictJava** - 01-05 14:03:51 |
    • **lh3/ksw2** - alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 124 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 24 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-06-27 17:21:12 |
    • **chao1224/ChatDrug** - feedback`, `drug`, `drug-discovery`, `drug-editing`, `editing`, `llm`, `molecule`, `motif`, `peptide`, `protein`, `retrieval`, `secondary-structure`, `small-molecule`, `structure`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 124 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 8 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 3 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-28 19:44:44 |
    • **rdkit/rdkit-js** - discovery`, `javascript`, `molecule`, `molecule-viewer`, `molecule-visualization`, `node-js`, `npm`, `rdkit`, `react`, `wasm`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 123 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 35 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Dockerfile <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-01 09:54:52 |
    • **blazerye/DrugAssist** - for-science`, `drug-discovery`, `instruction-datasets`, `instruction-tuning`, `large-language-models`, `molecule-generation`, `molecule-optimization`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 123 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 3 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python |
    • **bigdatagenomics/mango** - 12-02 22:21:57 |
    • **OpenGene/repaq** - high compression ratio<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 120 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 20 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-09-22 02:48:34 |
    • **Bioconductor/BiocStickers** - feel free to contribute and/or modify.<br>`bioconductor`, `stickers`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 119 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 86 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> R <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-05-10 05:58:21 |
    • **greenelab/pancancer** - types<br>`analysis`, `cancer`, `classifier`, `gene-expression`, `machine-learning`, `methodology`, `pancancer`, `tcga`, `tool`, `transcriptome`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 119 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 58 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Jupyter Notebook <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD-3-Clause license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2018-03-01 15:38:33 |
    • **Roche/BalancedLossNLP** - 06-12 21:51:15 |
    • **Merck/deepbgc** - lstm`, `biosynthetic-gene-clusters`, `deep-learning`, `deepbgc`, `natural-products`, `pfam2vec`, `python`, `synthetic-biology`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 117 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 26 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Jupyter Notebook <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-11-11 12:48:56 |
    • **benevolentAI/MolBERT** - 06-06 10:28:35 |
    • **genentech/equifold** - Grained Structure Representation<br>`machine-learning`, `proteins`, `structural-biology`, `structure-prediction`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 116 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 15 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-01-08 19:51:30 |
    • **OpenGene/GeneFuse** - 02-21 08:07:06 |
    • **biosustain/cameo** - computer aided metabolic engineering &amp; optimization<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 113 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 42 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2022-11-07 14:54:19 |
    • **EBI-Metagenomics/emg-viral-pipeline** - 05-08 20:10:03 |
    • **OpenGene/gencore** - sequencing`, `duplex`, `duplex-sequencing`, `duplication`, `ngs`, `sequencing`, `sequencing-error`, `sequencing-noise`, `somatic`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 109 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 32 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-10-27 06:19:21 |
    • **OpenGene/fastv** - fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.<br>`2019-ncov`, `bioinformatics`, `coronavirus`, `covid`, `covid-19`, `hcov`, `meta-genomics`, `microbial-sequences`, `mngs`, `ngs`, `sars-cov-2`, `sequencing`, `viral`, `viral-infectious-diseases`, `virus`, `visualization`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 109 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 24 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-10-27 06:16:38 |
    • **lh3/yak** - mer analyzer<br>`bioinformatics`, `k-mer`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 108 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 8 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-04-01 21:39:44 |
    • **lh3/fermikit** - assembly`, `genomics`, `variant-calling`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 108 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 23 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> TeX <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2020-11-30 22:57:56 |
    • **Merck/Halyard** - 01-23 16:59:32 |
    • **ome/ngff** - generation file format (NGFF) specifications for storing bioimaging data in the cloud.<br>`bioimaging`, `cloud`, `data-science`, `file-formats`, `spec`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 107 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 38 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Bikeshed <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Other <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-02 06:26:47 |
    • **soedinglab/CCMpred** - Residue Contacts from Correlated Mutations predicted quickly and accurately.<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 107 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 25 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU Affero General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-11-08 07:51:35 |
    • **lh3/minimap** - 09-20 14:15:02 |
    • **chao1224/Geom3D** - structures`, `ai4science`, `biology`, `chemistry`, `crystals`, `drugs`, `equivariance`, `geometry`, `group`, `invariance`, `material`, `molecules`, `physics`, `proteins`, `symmetry`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 105 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 9 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 2 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-05 03:18:58 |
    • **phuse-org/phuse-scripts** - 08-01 15:21:20 |
    • **chembl/FPSim2** - search`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 104 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 17 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-15 11:13:05 |
    • **bayer-science-for-a-better-life/Img2Mol** - 03-24 18:07:41 |
    • **Biogen-Inc/tidyCDISC** - 09-22 15:18:20 |
    • **openpharma/mmrm** - 06-03 18:02:15 |
    • **MolecularAI/DockStream** - design`, `jupyter-notebook`, `molecular-docking`, `reinforcement-learning`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 100 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 30 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-03-16 07:07:10 |
    • **Bayer-Group/paquo** - QuPath and Python conversations<br>`digital-pathology`, `python`, `qupath`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 100 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 16 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-02 18:21:27 |
    • **genentech/gReLU** - 06-07 20:29:13 |
    • **lh3/hickit** - cell Hi-C (Dip-C) and general Hi-C<br>`bioinformatics`, `genomics`, `hi-c`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 98 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 11 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2021-02-04 01:47:43 |
    • **aqlaboratory/rgn2** - 11-28 17:16:23 |
    • **lh3/bgt** - genome<br>`bioinformatics`, `genomics`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 96 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 10 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2019-09-04 19:43:27 |
    • **scverse/rapids_singlecell** - accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.<br>`anndata`, `bioinformatics`, `gpu`, `scverse`, `single-cell`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 96 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 18 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-03 18:07:06 |
    • **shenwei356/bio_scripts** - 02-12 13:21:47 |
    • **EBISPOT/OLS** - api`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 95 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 40 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> JavaScript <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-04-28 20:09:19 |
    • **Sanofi-Public/CodonBERT** - 05-03 19:24:06 |
    • **OpenGene/scrnapip** - Cell RNA Sequencing Analysis<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 94 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 14 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> HTML <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2023-10-16 01:24:06 |
    • **EBI-Metagenomics/genomes-catalogue-pipeline** - 06-06 09:44:21 |
    • **samtools/tabix** - 08-03 14:29:38 |
    • **shenwei356/BlackheartedHospital** - power-workgroup/Hospital](https://github.com/open-power-workgroup/Hospital))<br>网传附莆田系医院名单，欢迎更新<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 92 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 15 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2016-05-03 07:06:09 |
    • **AbSciBio/unlocking-de-novo-antibody-design** - 01-09 17:36:19 |
    • **schrodinger/gpusimilarity** - analysis`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 91 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 26 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> C++ <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> BSD 3-Clause "New" or "Revised" License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-01-24 19:08:08 |
    • **lh3/dipcall** - based variant calling pipeline for a pair of phased haplotype assemblies<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 91 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 9 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> JavaScript <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2021-06-06 20:36:10 |
    • **Bioconductor/CSAMA** - 06-06 12:04:08 |
    • **AstraZeneca/onto_merger** - networks`, `biology`, `graph`, `kg`, `knowledge`, `knowledge-graph`, `mapping`, `ontology`, `ontology-alignment`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 89 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 5 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> HTML <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-01-11 19:22:08 |
    • **hoelzer-lab/rnaflow** - Seq differential gene expression pipeline using Nextflow<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 89 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 19 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> HTML <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> GNU General Public License v3.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-26 20:45:37 |
    • **shenwei356/perfect-bioinformatic-tools** - 03-19 10:22:54 |
    • **Sanofi-IADC/whispr** - 06-04 12:01:03 |
    • **calico/scBasset** - based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 88 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 11 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Jupyter Notebook <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> Apache License 2.0 <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-02-08 19:20:16 |
    • **shenwei356/bio** - performance bioinformatics package in Golang<br>`bioinformatics`, `golang`, `minimizer`, `package`, `scaled-minhash`, `sequence`, `syncmer`, `taxdump`, `taxonomy`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 88 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 9 <img src='https://github.com/HubTou/topgh/blob/main/icons/watchers.png'> 7 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Go <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT license <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-03-11 09:41:44 |
    • **owkin/HE2RNA_code** - 07-06 20:53:24 |
    • **scverse/pertpy** - cell`<br><img src='https://github.com/HubTou/topgh/blob/main/icons/gstars.png'> 87 <img src='https://github.com/HubTou/topgh/blob/main/icons/forks.png'> 19 <img src='https://github.com/HubTou/topgh/blob/main/icons/code.png'> Python <img src='https://github.com/HubTou/topgh/blob/main/icons/license.png'> MIT License <img src='https://github.com/HubTou/topgh/blob/main/icons/last.png'> 2024-06-08 08:07:34 |
    • ^1 - 06-09
Programming Languages
Python 78 C 34 C++ 11 Jupyter Notebook 11 R 9 Java 9 Go 8 HTML 7 JavaScript 5 Scala 4
Categories
Ranked by starred repositories 201
Sub Categories
Keywords
bioinformatics 58 genomics 26 deep-learning 20 python 18 machine-learning 13 drug-discovery 12 cheminformatics 10 ngs 10 sequencing 8 golang 7 dna 7 chemistry 6 sequence-alignment 6 protein-structure 6 r 6 data-science 6 scverse 6 astrazeneca 5 pytorch 5 proteins 5 java 5 neural-networks 5 reinforcement-learning 4 transcriptomics 4 anndata 4 fastq 4 graph 4 denovo-design 4 cancer 4 molecule 4 biology 4 tool 4 metagenomics 4 cross-platform 4 sequence-analysis 4 workflow 4 pipeline 4 denovo-assembly 3 taxonomy 3 scanpy 3 alignment 3 workflow-engine 3 genome-graph 3 geometry 3 transfer-learning 3 scrna-seq 3 analysis 3 sequence 3 visualization 3 self-supervised-learning 3