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Projects in Awesome Lists tagged with reproducibility
A curated list of projects in awesome lists tagged with reproducibility .
https://github.com/iterative/dvc
🦉 ML Experiments and Data Management with Git
ai collaboration data-science data-version-control developer-tools git hacktoberfest machine-learning python reproducibility
Last synced: 29 Sep 2024
https://github.com/wandb/wandb
🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.
collaboration data-science data-versioning deep-learning experiment-track hyperparameter-optimization hyperparameter-search hyperparameter-tuning jax keras machine-learning ml-platform mlops model-versioning pytorch reinforcement-learning reproducibility tensorflow
Last synced: 29 Sep 2024
https://github.com/idsia/sacred
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
infrastructure machine-learning mongodb python reproducibility reproducible-research reproducible-science
Last synced: 29 Sep 2024
https://github.com/IDSIA/sacred
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
infrastructure machine-learning mongodb python reproducibility reproducible-research reproducible-science
Last synced: 01 Aug 2024
https://github.com/ashleve/lightning-hydra-template
PyTorch Lightning + Hydra. A very user-friendly template for ML experimentation. ⚡🔥⚡
best-practices config deep-learning hydra mlops project-structure pytorch pytorch-lightning reproducibility template
Last synced: 01 Oct 2024
https://github.com/catalyst-team/catalyst
Accelerated deep learning R&D
computer-vision deep-learning distributed-computing image-classification image-processing image-segmentation information-retrieval infrastructure machine-learning metric-learning natural-language-processing object-detection python pytorch recommender-system reinforcement-learning reproducibility research text-classification text-segmentation
Last synced: 01 Oct 2024
https://github.com/snakemake/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
reproducibility snakemake workflow-management
Last synced: 29 Sep 2024
https://github.com/rlworkgroup/garage
A toolkit for reproducible reinforcement learning research.
pytorch reproducibility rl-algorithms tensorflow
Last synced: 30 Sep 2024
https://github.com/clementchadebec/benchmark_vae
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
benchmarking beta-vae comparison normalizing-flows pixel-cnn pytorch reproducibility reproducible-research vae vae-gan vae-implementation vae-pytorch variational-autoencoder vq-vae wasserstein-autoencoder
Last synced: 30 Sep 2024
https://github.com/clementchadebec/benchmark_VAE
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
benchmarking beta-vae comparison normalizing-flows pixel-cnn pytorch reproducibility reproducible-research vae vae-gan vae-implementation vae-pytorch variational-autoencoder vq-vae wasserstein-autoencoder
Last synced: 02 Aug 2024
https://github.com/Cloud-CV/EvalAI
:cloud: :rocket: :bar_chart: :chart_with_upwards_trend: Evaluating state of the art in AI
ai ai-challenges angular7 angularjs artificial-intelligence challenge django docker evalai evaluation leaderboard machine-learning python reproducibility reproducible-research
Last synced: 31 Jul 2024
https://github.com/cloud-cv/evalai
:cloud: :rocket: :bar_chart: :chart_with_upwards_trend: Evaluating state of the art in AI
ai ai-challenges angular7 angularjs artificial-intelligence challenge django docker evalai evaluation leaderboard machine-learning python reproducibility reproducible-research
Last synced: 27 Sep 2024
https://github.com/mlreef/mlreef
The collaboration workspace for Machine Learning
artificial-intelligence data-science deep-learning deeplearning machine-learning machine-learning-algorithms mlops mlops-environment models mxnet pytorch reproducibility tensorflow
Last synced: 30 Sep 2024
https://github.com/MLReef/mlreef
The collaboration workspace for Machine Learning
artificial-intelligence data-science deep-learning deeplearning machine-learning machine-learning-algorithms mlops mlops-environment models mxnet pytorch reproducibility tensorflow
Last synced: 31 Jul 2024
https://github.com/joedicastro/vps-comparison
A comparison between some VPS providers. It uses Ansible to perform a series of automated benchmark tests over the VPS servers that you specify. It allows the reproducibility of those tests by anyone that wanted to compare these results to their own. All the tests results are available in order to provide independence and transparency.
ansible cloud comparison hosting independence python reproducibility transparency vps
Last synced: 30 Sep 2024
https://github.com/ropensci/drake
An R-focused pipeline toolkit for reproducibility and high-performance computing
data-science drake high-performance-computing makefile peer-reviewed pipeline r r-package reproducibility reproducible-research ropensci rstats workflow
Last synced: 27 Sep 2024
https://github.com/the-nix-way/dev-templates
Dev environments for numerous languages based on Nix flakes [maintainer=@lucperkins]
Last synced: 27 Sep 2024
https://github.com/MaurizioFD/RecSys2019_DeepLearning_Evaluation
This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.
bpr bprmf bprslim collaborative-filtering content-based-recommendation deep-learning evaluation-framework funksvd hybrid-recommender-system hyperparameters knn matrix-completion matrix-factorization neural-network recommendation-algorithms recommendation-system recommender-system reproducibility reproducible-research slimelasticnet
Last synced: 03 Aug 2024
https://github.com/ddsjoberg/gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
easy-to-use gt html5 r r-package regression-models reproducibility reproducible-research rstats statistics summary-statistics summary-tables table1 tableone
Last synced: 27 Sep 2024
https://github.com/toshas/torch-fidelity
High-fidelity performance metrics for generative models in PyTorch
evaluation frechet-inception-distance gan generative-model inception-score kernel-inception-distance metrics perceptual-path-length precision pytorch reproducibility reproducible-research
Last synced: 03 Aug 2024
https://github.com/ropensci/targets
Function-oriented Make-like declarative workflows for R
data-science high-performance-computing make peer-reviewed pipeline r r-package r-targetopia reproducibility reproducible-research rstats targets workflow
Last synced: 30 Sep 2024
https://github.com/davhau/mach-nix
Create highly reproducible python environments
mach-nix nix nix-expression nixos nixpkgs python python-deps python-environment python-packages reproducibility
Last synced: 27 Sep 2024
https://github.com/nix-community/dream2nix
Simplified nix packaging for various programming language ecosystems [maintainer=@DavHau]
2nix dream-to-nix hacktoberfest lang2nix nix nix-community-buildbot nixos nodejs package-management reproducibility rust
Last synced: 27 Sep 2024
https://github.com/tidyverse/reprex
Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
github r reproducibility rmarkdown stackoverflow
Last synced: 13 Aug 2024
https://github.com/jennybc/reprex
Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
github r reproducibility rmarkdown stackoverflow
Last synced: 31 Jul 2024
https://github.com/openwdl/wdl
Workflow Description Language - Specification and Implementations
bioinformatics cloud cromwell openwdl reproducibility reproducible-science wdl workflow
Last synced: 01 Aug 2024
https://github.com/benmarwick/rrtools
rrtools: Tools for Writing Reproducible Research in R
quarto quarto-template r reproducibility reproducible-paper reproducible-research reproducible-science research-compendium research-paper research-project research-tool
Last synced: 01 Aug 2024
https://github.com/grok-ai/nn-template
Generic template to bootstrap your PyTorch project.
best-practices best-practises cookiecutter deep-learning dvc github-actions huggingface-datasets hydra mkdocs pre-commit project-structure pytorch pytorch-lightning reproducibility research streamlit template wandb weights-and-biases
Last synced: 29 Sep 2024
https://github.com/tweag/jupyenv
Declarative and reproducible Jupyter environments - powered by Nix
jupyter jupyter-notebooks jupyterlab nix reproducibility
Last synced: 27 Sep 2024
https://github.com/henripal/labnotebook
LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.
experiment-manager experimental-data machine-learning postgres postgresql python reproducibility reproducible-research vuejs webapp
Last synced: 01 Aug 2024
https://github.com/understandable-machine-intelligence-lab/Quantus
Quantus is an eXplainable AI toolkit for responsible evaluation of neural network explanations
deep-learning explainable-ai interpretability machine-learning pytorch quantification-evaluation-methods reproducibility tensorflow xai
Last synced: 03 Aug 2024
https://github.com/NVIDIA/tensorflow-determinism
Providing reproducibility in deep learning frameworks
atomics d9m deep-learning determinism deterministic-ops frameworks fwr13y gpu-determinism gpu-support ngc noise noise-reduction pytorch r13y reproducibility seed seeder tensorflow variance-reduction
Last synced: 07 Aug 2024
https://github.com/nvidia/framework-reproducibility
Providing reproducibility in deep learning frameworks
atomics d9m deep-learning determinism deterministic-ops frameworks fwr13y gpu-determinism gpu-support ngc noise noise-reduction pytorch r13y reproducibility seed seeder tensorflow variance-reduction
Last synced: 01 Oct 2024
https://github.com/NVIDIA/framework-reproducibility
Providing reproducibility in deep learning frameworks
atomics d9m deep-learning determinism deterministic-ops frameworks fwr13y gpu-determinism gpu-support ngc noise noise-reduction pytorch r13y reproducibility seed seeder tensorflow variance-reduction
Last synced: 02 Aug 2024
https://github.com/datmo/datmo
Open source production model management tool for data scientists
artificial-intelligence data-science deep-learning machine-learning reproducibility version-control
Last synced: 02 Aug 2024
https://github.com/bwplotka/bingo
Like `go get` but for Go tools! CI Automating versioning of Go binaries in a nested, isolated Go modules.
go golang gomodules modules packages pin reproducibility thanos versioning
Last synced: 03 Oct 2024
https://github.com/mit-ll-responsible-ai/hydra-zen
Create powerful Hydra applications without the yaml files and boilerplate code.
configurable configuration dataclasses deep-learning dynamic-configuration machine-learning machinelearning pytorch pytorch-lightning reproducibility reproducible-science scalable yaml-configuration
Last synced: 03 Aug 2024
https://github.com/vida-nyu/reprozip
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Last synced: 29 Sep 2024
https://github.com/systemslab/popper
Container-native task automation engine.
automation-engine cli containers devops docker podman reproducibility sciops singularity workflows
Last synced: 07 Aug 2024
https://github.com/getpopper/popper
Container-native task automation engine.
automation-engine cli containers devops docker podman reproducibility sciops singularity workflows
Last synced: 31 Jul 2024
https://github.com/VIDA-NYU/reprozip
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Last synced: 31 Jul 2024
https://github.com/matthewcroughan/nixcfg
My nix configuration(s), using flakes. It's my laptop, it's my servers, it's my everything, in code.
dotfiles flakes infrastructure-as-code nix nixos reproducibility
Last synced: 27 Sep 2024
https://github.com/MatthewCroughan/nixcfg
My nix configuration(s), using flakes. It's my laptop, it's my servers, it's my everything, in code.
dotfiles flakes infrastructure-as-code nix nixos reproducibility
Last synced: 01 Aug 2024
https://github.com/ptrsr/pi-ci
Prepare Raspberry Pi 3, 4 & 5 configurations using a virtual machine.
ansible container continuous-integration docker raspberry-pi reproducibility virtual-machine
Last synced: 26 Sep 2024
https://github.com/AI4LIFE-GROUP/OpenXAI
OpenXAI : Towards a Transparent Evaluation of Model Explanations
benchmark explainability explainable-ai interpretability leaderboard reproducibility
Last synced: 02 Aug 2024
https://github.com/maxmcd/bramble
Purely functional build system and package manager
bramble build-system golang package-manager reproducibility starlark
Last synced: 01 Aug 2024
https://github.com/mllg/batchtools
Tools for computation on batch systems
batchexperiments batchjobs cran docker-swarm high-performance-computing hpc hpc-clusters lsf openlava parallel-computing r reproducibility sge slurm torque
Last synced: 01 Aug 2024
https://github.com/iterative/example-get-started
Get started DVC project (NLP, random forest)
dvc example machine-learning nlp python random-forest reproducibility reproducible reproducible-research
Last synced: 03 Aug 2024
https://swcarpentry.github.io/make-novice/
Automation and Make
automation carpentries english lesson make programming reproducibility software-carpentry stable
Last synced: 12 Sep 2024
https://github.com/swcarpentry/make-novice
Automation and Make
automation carpentries english lesson make programming reproducibility software-carpentry stable
Last synced: 04 Aug 2024
https://github.com/ropensci/DataPackageR
An R package to enable reproducible data processing, packaging and sharing.
peer-reviewed r r-package reproducibility rstats
Last synced: 01 Aug 2024
https://github.com/minerva-ml/steppy
Lightweight, Python library for fast and reproducible experimentation :microscope:
data-science deep-learning image-processing machine-learning minimal-interface nlp open-source pipeline python python-library python3 reproducibility reproducible-research steppy steppy-library steppy-toolkit steps
Last synced: 31 Jul 2024
https://github.com/neptune-ml/steppy
Lightweight, Python library for fast and reproducible experimentation :microscope:
data-science deep-learning image-processing machine-learning minimal-interface nlp open-source pipeline python python-library python3 reproducibility reproducible-research steppy steppy-library steppy-toolkit steps
Last synced: 28 Aug 2024
https://github.com/glotzerlab/signac
Manage large and heterogeneous data spaces on the file system.
data data-management database hacktoberfest reproducibility
Last synced: 05 Aug 2024
https://github.com/lockedata/starters
R Package 📦 for initializing projects for various R activities :nut_and_bolt:
developer-tools r r-package reproducibility rstats setup setup-tool setuptools
Last synced: 05 Aug 2024
https://github.com/ropensci/tarchetypes
Archetypes for targets and pipelines
data-science high-performance-computing peer-reviewed pipeline r r-package r-targetopia reproducibility rstats targets workflow
Last synced: 05 Aug 2024
https://github.com/aaronpeikert/reproducible-research
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
containerization dependency-management literate-programming open-science r reproducibility version-management
Last synced: 13 Aug 2024
https://github.com/stencila/dockta
🐳 A Docker image builder for researchers
docker dockerfile nodejs python r reproducibility
Last synced: 01 Aug 2024
https://ropensci.github.io/reproducibility-guide
:no_entry: ARCHIVED :no_entry:
reproducibility reproducibility-guide reproducible-research
Last synced: 02 Oct 2024
https://github.com/ropensci/ezknitr
Avoid the typical working directory pain when using 'knitr'
knitr peer-reviewed r r-package reproducibility rmarkdown rmd rstats
Last synced: 13 Aug 2024
https://github.com/deanmarchiori/analysis-flow
Data Analysis Workflows & Reproducibility Learning Resources
data-analysis reproducibility reproducible-data-science reproducible-science tooling workflow
Last synced: 13 Aug 2024
https://github.com/formlio/forml
ForML - A development framework and MLOps platform for the lifecycle management of data science projects
ai data-science machine-learning ml mlops portability python reproducibility
Last synced: 03 Aug 2024
https://github.com/wlandau/targets-tutorial
Short course on the targets R package
data-science make pipeline r r-package reproducibility reproducible-research rstats targets workflow
Last synced: 13 Aug 2024
https://github.com/braintwister/docker-devel-env
Fast, reproducible, and portable software development environments
clang cmake conan cuda development docker eclipse gcc jenkins nsight portability reproducibility vscode
Last synced: 26 Sep 2024
https://github.com/BrainTwister/docker-devel-env
Fast, reproducible, and portable software development environments
clang cmake conan cuda development docker eclipse gcc jenkins nsight portability reproducibility vscode
Last synced: 17 Aug 2024
https://github.com/jvalegre/aqme
Automated Quantum Mechanical Environments (AQME) offers transparent and reproducible workflows available for Jupyter Notebooks and command lines, including: 1) RDKit- and CREST-based conformer generation, 2) QM input file creation, 3) post-processing of QM output files, 4) generation of xTB, DFT and RDKit descriptors. https://aqme.readthedocs.io
automation cheminformatics jupyter-notebooks python quantum-chemistry reproducibility workflows
Last synced: 03 Oct 2024
https://github.com/greenelab/continuous_analysis
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
continuous-integration methodology open-science reproducibility supplement
Last synced: 07 Aug 2024
https://github.com/ropensci/gittargets
Data version control for reproducible analysis pipelines in R with {targets}.
data-science data-version-control data-versioning r r-package reproducibility reproducible-research rstats targets workflow
Last synced: 30 Sep 2024
https://github.com/gesistsa/rang
🐶 (Re)constructing R computational environments
cran r reproducibility reproducible-research rstats
Last synced: 13 Aug 2024
https://github.com/neurogenomics/rworkflows
Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.
bioconductor containers continuous-integration cran-r docker dockerhub github-actions r reproducibility workflows
Last synced: 02 Aug 2024
https://github.com/odeleongt/postr
Prepare reproducible R Markdown posters
poster r reproducibility template
Last synced: 05 Aug 2024
https://github.com/polydawn/repeatr
Repeatr: Reproducible, hermetic Computation. Provision containers from Content-Addressable snapshots; run using familiar containers (e.g. runc); store outputs in Content-Addressable form too! JSON API; connect your own pipelines! (Or, use github.com/polydawn/stellar for pipelines!)
containers distributed formula reproducibility reproducible-builds snapshots timeless timeless-stack
Last synced: 06 Aug 2024
https://github.com/wlandau/targets-shiny
Example Shiny app containing a targets pipeline.
high-performance-computing make pipeline r reproducibility reproducible-research shiny targets workflow
Last synced: 13 Aug 2024
https://github.com/HALFpipe/HALFpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
bids fmri meta-analysis neuroimaging pipeline reproducibility
Last synced: 02 Aug 2024
https://github.com/wlandau/targets-minimal
A minimal example data analysis project with the targets R package
data-science high-performance-computing pipeline r reproducibility reproducible-research rstats statistics targets workflow
Last synced: 05 Aug 2024
https://github.com/wlandau/drake-examples
Example workflows for the drake R package
data-science drake high-performance-computing makefile pipeline r reproducibility reproducible-research ropensci rstats workflow
Last synced: 05 Aug 2024
https://github.com/ropensci-books/drake
The user manual for the drake R package
data-science drake high-performance-computing makefile pipeline r reproducibility reproducible-research ropensci rstats workflow
Last synced: 02 Aug 2024
https://github.com/baumer-lab/fertile
creating optimal conditions for reproducibility
r reproducibility reproducible-research tidyverse workflow
Last synced: 13 Aug 2024
https://github.com/catalyst-team/alchemy
Experiments logging & visualization
deep-learning experiment-track infrastructure keras machine-learning pytorch reinforcement-learning reproducibility research tensorflow
Last synced: 03 Aug 2024
https://github.com/ropensci/stantargets
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
bayesian high-performance-computing make r r-targetopia reproducibility rstats rstats-package stan statistics targets
Last synced: 13 Aug 2024
https://github.com/ropensci-archive/outsider
:warning: ARCHIVED :warning: Install and run programs, outside of R, inside of R
Last synced: 30 Jul 2024
https://github.com/zincware/ZnTrack
Create, visualize, run & benchmark DVC pipelines in Python & Jupyter notebooks.
data-science data-version-control developer-tools dvc git machine-learning python reproducibility
Last synced: 03 Aug 2024
https://github.com/rostools/prodigenr
Project directory generator R package
cran devtools open-science open-source project-management reproducibility reproducible-research reproducible-science rstats rstudio usethis
Last synced: 13 Aug 2024
https://github.com/fzakaria/nix-harden-needed
Bubble up the correct paths to your shared object libraries in Nix
nix nixos nixpkgs reproducibility
Last synced: 27 Sep 2024
https://github.com/PredictiveEcology/reproducible
A set of tools for R that enhance reproducibility beyond package management
r-package reproducibility reproducible-research
Last synced: 01 Aug 2024
https://github.com/danieldeutsch/repro
Repro is a library for easily running code from published papers via Docker.
docker machine-learning nlp reproducibility reproducible-research
Last synced: 01 Aug 2024
https://github.com/hakyimlab/ukbrest
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
biobank reproducibility reproducible-research reproducible-science uk-biobank
Last synced: 01 Aug 2024
https://github.com/catalyst-team/classification
Catalyst.Classification
augmentation catalyst classification classification-pipeline deep-learning docker focal-loss image-classification image-processing machine-learning pipeline python pytorch reproducibility
Last synced: 01 Aug 2024
https://github.com/wlandau/targets-four-minutes
Get started with the {targets} R package in four minutes
make pipeline reproducibility rstats targets
Last synced: 13 Aug 2024
https://github.com/contextlab/davos
Import packages in Python, even if they aren't installed!
environment-management google-colab import install ipython jupyter package-management pip python reproducibility
Last synced: 28 Sep 2024
https://github.com/jamesmenetrey/unine-twine
TWINE: An Embedded Trusted Runtime for WebAssembly. This is the repository that contains the source code of Twine and the related benchmarks.
benchmarks paper reproducibility sgx twine webassembly
Last synced: 02 Aug 2024
https://github.com/maxhbr/myconfig
my Linux Configuration
configuration dotfiles emacs linux neo2 nix nixos reproducibility xmonad zsh
Last synced: 03 Oct 2024
https://github.com/analythium/deps
Dependency Management with roxygen-style Comments
dependencies packages reproducibility rstats
Last synced: 13 Aug 2024
https://github.com/HenrikBengtsson/R.rsp
:page_facing_up: R package: Dynamic generation of scientific reports
cran document markup package r report reproducibility science
Last synced: 13 Aug 2024
https://github.com/catalyst-team/segmentation
Catalyst.Segmentation
augmentation catalyst deep-learning docker image-processing image-segmentation jaccard machine-learning pipeline python pytorch reproducibility segmentation segmentation-pipeline
Last synced: 01 Aug 2024
https://github.com/sgibson91/binderhub-deploy
Deploy a BinderHub from scratch on Microsoft Azure
azure binder binderhub cloud docker hut23 reproducibility reproducible-research
Last synced: 13 Aug 2024
https://github.com/benmarwick/researchcompendium
NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach
compendium reproducibility reproducible-research reproducible-science
Last synced: 05 Aug 2024
https://github.com/sinhrks/daskperiment
Reproducibility for Humans: A lightweight tool to perform reproducible machine learning experiment.
dask machine-learning reproducibility
Last synced: 03 Aug 2024
https://github.com/minerva-ml/steppy-toolkit
Curated set of transformers that make your work with steppy faster and more effective :telescope:
data-science deep-learning keras keras-models machine-learning nlp open-source pipeline pipeline-framework python python3 pytorch pytorch-models reproducibility reproducible-research steppy steppy-toolkit steps tensorflow tensorflow-models
Last synced: 26 Sep 2024
https://github.com/jvalegre/robert
Automated machine learning protocols that start from CSV databases of descriptors or SMILES and produce publication-quality results in Chemistry studies with only one command line.
automation cheminformatics machine-learning python reproducibility scikit-learn workflows
Last synced: 03 Oct 2024