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Projects in Awesome Lists tagged with reproducible-research
A curated list of projects in awesome lists tagged with reproducible-research .
https://github.com/Netflix/metaflow
:rocket: Build and manage real-life ML, AI, and data science projects with ease!
ai aws azure data-science datascience gcp high-performance-computing kubernetes machine-learning ml ml-infrastructure ml-platform mlops model-management productivity python r r-package reproducible-research rstats
Last synced: 30 Jul 2024
https://github.com/netflix/metaflow
:rocket: Build and manage real-life ML, AI, and data science projects with ease!
ai aws azure data-science datascience gcp high-performance-computing kubernetes machine-learning ml ml-infrastructure ml-platform mlops model-management productivity python r r-package reproducible-research rstats
Last synced: 29 Sep 2024
https://github.com/antixk/pytorch-vae
A Collection of Variational Autoencoders (VAE) in PyTorch.
architecture beta-vae celeba-dataset deep-learning dfc-vae gumbel-softmax iwae paper-implementations pytorch pytorch-implementation pytorch-vae reproducible-research vae vae-implementation variational-autoencoders vqvae wae
Last synced: 30 Sep 2024
https://github.com/AntixK/PyTorch-VAE
A Collection of Variational Autoencoders (VAE) in PyTorch.
architecture beta-vae celeba-dataset deep-learning dfc-vae gumbel-softmax iwae paper-implementations pytorch pytorch-implementation pytorch-vae reproducible-research vae vae-implementation variational-autoencoders vqvae wae
Last synced: 02 Aug 2024
https://github.com/idsia/sacred
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
infrastructure machine-learning mongodb python reproducibility reproducible-research reproducible-science
Last synced: 29 Sep 2024
https://github.com/IDSIA/sacred
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
infrastructure machine-learning mongodb python reproducibility reproducible-research reproducible-science
Last synced: 01 Aug 2024
https://github.com/nextflow-io/nextflow
A DSL for data-driven computational pipelines
aws bioinformatics cloud dataflow docker groovy hello hpc nextflow pipeline pipeline-framework reproducible-research reproducible-science sge singularity singularity-containers slurm workflow-engine
Last synced: 30 Sep 2024
https://github.com/wenbihan/reproducible-image-denoising-state-of-the-art
Collection of popular and reproducible image denoising works.
art arxiv benchmarking cnn curated-list deep-learning denoising-algorithms image-denoising image-processing image-reconstruction image-restoration implementation inverse-problems noise noise-reduction performance-analysis recovery-image reproducible-research state-of-the-art summary
Last synced: 30 Sep 2024
https://github.com/mdeff/fma
FMA: A Dataset For Music Analysis
dataset deep-learning music-analysis music-information-retrieval open-data open-science reproducible-research
Last synced: 01 Aug 2024
https://github.com/javierantoran/bayesian-neural-networks
Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more
approximate-inference bayes-by-backprop bayesian-inference bayesian-neural-networks classification deep-learning hmc kronecker-factored-approximation langevin-dynamics local-reparametrization-trick mc-dropout mcmc out-of-distribution-detection pytorch regression reproducible-research sgld uncertainty uncertainty-neural-networks variational-inference
Last synced: 30 Sep 2024
https://github.com/clementchadebec/benchmark_vae
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
benchmarking beta-vae comparison normalizing-flows pixel-cnn pytorch reproducibility reproducible-research vae vae-gan vae-implementation vae-pytorch variational-autoencoder vq-vae wasserstein-autoencoder
Last synced: 30 Sep 2024
https://github.com/JavierAntoran/Bayesian-Neural-Networks
Pytorch implementations of Bayes By Backprop, MC Dropout, SGLD, the Local Reparametrization Trick, KF-Laplace, SG-HMC and more
approximate-inference bayes-by-backprop bayesian-inference bayesian-neural-networks classification deep-learning hmc kronecker-factored-approximation langevin-dynamics local-reparametrization-trick mc-dropout mcmc out-of-distribution-detection pytorch regression reproducible-research sgld uncertainty uncertainty-neural-networks variational-inference
Last synced: 02 Aug 2024
https://github.com/clementchadebec/benchmark_VAE
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
benchmarking beta-vae comparison normalizing-flows pixel-cnn pytorch reproducibility reproducible-research vae vae-gan vae-implementation vae-pytorch variational-autoencoder vq-vae wasserstein-autoencoder
Last synced: 02 Aug 2024
https://github.com/Cloud-CV/EvalAI
:cloud: :rocket: :bar_chart: :chart_with_upwards_trend: Evaluating state of the art in AI
ai ai-challenges angular7 angularjs artificial-intelligence challenge django docker evalai evaluation leaderboard machine-learning python reproducibility reproducible-research
Last synced: 31 Jul 2024
https://github.com/cloud-cv/evalai
:cloud: :rocket: :bar_chart: :chart_with_upwards_trend: Evaluating state of the art in AI
ai ai-challenges angular7 angularjs artificial-intelligence challenge django docker evalai evaluation leaderboard machine-learning python reproducibility reproducible-research
Last synced: 27 Sep 2024
https://github.com/insightsoftwareconsortium/itk
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing
Last synced: 30 Sep 2024
https://github.com/ropensci/drake
An R-focused pipeline toolkit for reproducibility and high-performance computing
data-science drake high-performance-computing makefile peer-reviewed pipeline r r-package reproducibility reproducible-research ropensci rstats workflow
Last synced: 27 Sep 2024
https://github.com/InsightSoftwareConsortium/ITK
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
cpp hacktoberfest image-analysis insight-toolkit itk medical-imaging numfocus open-science open-source python reproducible-research scientific-computing
Last synced: 30 Jul 2024
https://github.com/MaurizioFD/RecSys2019_DeepLearning_Evaluation
This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.
bpr bprmf bprslim collaborative-filtering content-based-recommendation deep-learning evaluation-framework funksvd hybrid-recommender-system hyperparameters knn matrix-completion matrix-factorization neural-network recommendation-algorithms recommendation-system recommender-system reproducibility reproducible-research slimelasticnet
Last synced: 03 Aug 2024
https://github.com/ddsjoberg/gtsummary
Presentation-Ready Data Summary and Analytic Result Tables
easy-to-use gt html5 r r-package regression-models reproducibility reproducible-research rstats statistics summary-statistics summary-tables table1 tableone
Last synced: 27 Sep 2024
https://github.com/toshas/torch-fidelity
High-fidelity performance metrics for generative models in PyTorch
evaluation frechet-inception-distance gan generative-model inception-score kernel-inception-distance metrics perceptual-path-length precision pytorch reproducibility reproducible-research
Last synced: 03 Aug 2024
https://github.com/ropensci/targets
Function-oriented Make-like declarative workflows for R
data-science high-performance-computing make peer-reviewed pipeline r r-package r-targetopia reproducibility reproducible-research rstats targets workflow
Last synced: 30 Sep 2024
https://github.com/junolab/weave.jl
Scientific reports/literate programming for Julia
julia literate-programming reproducible-research scientific-reports scientific-workflows
Last synced: 29 Sep 2024
https://github.com/JunoLab/Weave.jl
Scientific reports/literate programming for Julia
julia literate-programming reproducible-research scientific-reports scientific-workflows
Last synced: 01 Aug 2024
https://github.com/stencila/stencila
Programmable, reproducible, interactive documents
document executable interactive programmable reactive reproducible-research
Last synced: 31 Jul 2024
https://github.com/G-U-N/PyCIL
PyCIL: A Python Toolbox for Class-Incremental Learning
continual-learning deep-learning incremental-learning lifelong-learning machine-learning pytorch reproducible-research
Last synced: 03 Aug 2024
https://github.com/Axelrod-Python/Axelrod
A research tool for the Iterated Prisoner's Dilemma
computer-science evolutionary-game-theory game-theory mathematics prisoners-dilemma python reproducible-research
Last synced: 02 Aug 2024
https://github.com/iot-salzburg/gpu-jupyter
GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.
Last synced: 01 Aug 2024
https://github.com/benmarwick/rrtools
rrtools: Tools for Writing Reproducible Research in R
quarto quarto-template r reproducibility reproducible-paper reproducible-research reproducible-science research-compendium research-paper research-project research-tool
Last synced: 01 Aug 2024
https://github.com/crsh/papaja
papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.
apa apa-guidelines journal manuscript psychology r r-package reproducible-paper reproducible-research rmarkdown
Last synced: 02 Aug 2024
https://github.com/InsightSoftwareConsortium/itkwidgets
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
image-analysis imaging insight-toolkit itk jupyter jupyter-widget jupyterlab-extension kitware medical-visualization meshes open-science open-source point-cloud python reproducible-research scientific-computing scientific-visualization
Last synced: 30 Jul 2024
https://github.com/henripal/labnotebook
LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.
experiment-manager experimental-data machine-learning postgres postgresql python reproducibility reproducible-research vuejs webapp
Last synced: 01 Aug 2024
https://github.com/showyourwork/showyourwork
A workflow for reproducible and open scientific articles
continuous-integration latex open-source reproducible-research reproducible-science scientific-papers scientific-workflows
Last synced: 05 Aug 2024
https://github.com/mmasana/FACIL
Framework for Analysis of Class-Incremental Learning with 12 state-of-the-art methods and 3 baselines.
continual-learning deep-learning framework incremental-learning lifelong-learning machine-learning reproducible-research survey
Last synced: 03 Aug 2024
https://github.com/Audio-WestlakeU/FullSubNet
PyTorch implementation of "FullSubNet: A Full-Band and Sub-Band Fusion Model for Real-Time Single-Channel Speech Enhancement."
audio band denoising full-band narrow-band noise-reduction paper pretrained-model pytorch reproducible-research single-channel speech speech-enhancement speech-processing speech-separation sub-band
Last synced: 05 Aug 2024
https://github.com/recipy/recipy
Effortless method to record provenance in Python
database provenance python recipy reproducible-research science
Last synced: 03 Aug 2024
https://github.com/mpastell/pweave
Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.
jupyter python python3 reproducible-research scientific-reports
Last synced: 01 Oct 2024
https://github.com/mpastell/Pweave
Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.
jupyter python python3 reproducible-research scientific-reports
Last synced: 01 Aug 2024
https://github.com/gpoore/codebraid
Live code in Pandoc Markdown
bash javascript julia-language literate-programming markdown pandoc-filter pandoc-markdown python r-language reproducible-analysis reproducible-research reproducible-workflows rust rust-lang
Last synced: 29 Sep 2024
https://github.com/tweag/funflow
Functional workflows
content-addressable-storage reproducible-research workflow
Last synced: 01 Aug 2024
https://github.com/orfeotoolbox/otb
Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb
cpp14 image-processing open-science open-source orfeotoolbox osgeo otb remote-sensing reproducible-research
Last synced: 28 Sep 2024
https://github.com/hughjonesd/huxtable
An R package to create styled tables in multiple output formats, with a friendly, modern interface.
cran html huxtable latex microsoft-word powerpoint r reproducible-research tables
Last synced: 02 Oct 2024
https://github.com/ReproNim/neurodocker
Generate custom Docker and Singularity images, and minimize existing containers
apptainer containers docker dockerfile linux neuroscience nipype reproducible-research science singularity-container
Last synced: 02 Aug 2024
https://github.com/vida-nyu/reprozip
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Last synced: 29 Sep 2024
https://github.com/VIDA-NYU/reprozip
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
archiving computational-science docker hacktoberfest linux nyu ptrace python reproducibility reproducible-research reproducible-science reprounzip reprozip science scientific-computing vagrant
Last synced: 31 Jul 2024
https://github.com/Rapporter/pander
An R Pandoc Writer: Convert arbitrary R objects into markdown
literate-programming markdown pandoc pandoc-markdown r reproducible-research rmarkdown
Last synced: 05 Aug 2024
https://github.com/neuhausi/canvasXpress
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
analytics bioinformatics chart charting cran dash dashboard data-analytics data-science data-visualization genomics graphs javascript network network-visualization python r reproducible-research shiny visualization
Last synced: 13 Aug 2024
https://github.com/jupyter-guide/ten-rules-jupyter
Ten Simple Rules for Writing and Sharing Computational Analyses in Jupyter Notebooks
binder jupyter jupyter-lab jupyter-notebook machine-learning reproducible-research
Last synced: 01 Aug 2024
https://github.com/Kaixhin/FGLab
Future Gadget Laboratory
machine-learning reproducible-research reproducible-science
Last synced: 02 Aug 2024
https://github.com/ClaudioZandonella/trackdown
R package for collaborative writing and editing of R Markdown (or Sweave) documents in Google Docs.
markdown r r-package reproducible-research rstats
Last synced: 31 Jul 2024
https://github.com/nanxstats/liftr
🐳 Containerize R Markdown documents for continuous reproducibility
containerization docker dynamic-documents knitr liftr reproducible-research reproducible-science rmarkdown statistical-computing
Last synced: 26 Sep 2024
https://github.com/iterative/example-get-started
Get started DVC project (NLP, random forest)
dvc example machine-learning nlp python random-forest reproducibility reproducible reproducible-research
Last synced: 03 Aug 2024
https://github.com/vanheeringen-lab/seq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
atac-seq bioinformatics bioinformatics-pipeline chip-seq fastq ngs pipeline reproducible-research rna-seq snakemake sra workflows
Last synced: 03 Aug 2024
https://github.com/htm-community/htm.core
Actively developed Hierarchical Temporal Memory (HTM) community fork (continuation) of NuPIC. Implementation for C++ and Python
ai anomaly-detection cortical-learning cpp hierarchical-temporal-memory htm neural-networks neuromorphic-computing neuroscience neuroscience-inspired-ai nupic prediction reproducible-research sparse-distributed-memory
Last synced: 04 Aug 2024
https://github.com/ekstroem/dataMaid
An R package for data screening
data-cleaning data-screening reproducible-research
Last synced: 02 Aug 2024
https://github.com/ropensci/osfr
R interface to the Open Science Framework (OSF)
open-science osf reproducible-research
Last synced: 05 Aug 2024
https://github.com/minerva-ml/steppy
Lightweight, Python library for fast and reproducible experimentation :microscope:
data-science deep-learning image-processing machine-learning minimal-interface nlp open-source pipeline python python-library python3 reproducibility reproducible-research steppy steppy-library steppy-toolkit steps
Last synced: 31 Jul 2024
https://github.com/neptune-ml/steppy
Lightweight, Python library for fast and reproducible experimentation :microscope:
data-science deep-learning image-processing machine-learning minimal-interface nlp open-source pipeline python python-library python3 reproducibility reproducible-research steppy steppy-library steppy-toolkit steps
Last synced: 28 Aug 2024
https://github.com/yihui/litedown
A lightweight version of R Markdown
litedown markdown r r-markdown r-package report-generator reproducible-research
Last synced: 13 Aug 2024
https://github.com/rubenarslan/formr.org
Chain simple surveys into longer runs to build complex studies. Use R to generate pretty feedback and complex designs.
experience-sampling feedback formr javascript knitr opencpu php reproducible-research survey surveys
Last synced: 05 Aug 2024
https://github.com/alan-turing-institute/TCPDBench
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
benchmark benchmark-suite change-detection change-point change-point-detection changepoint reproducible-paper reproducible-research reproducible-science
Last synced: 01 Aug 2024
https://ropensci.github.io/reproducibility-guide
:no_entry: ARCHIVED :no_entry:
reproducibility reproducibility-guide reproducible-research
Last synced: 02 Oct 2024
https://github.com/pytask-dev/pytask
pytask is a workflow management system that facilitates reproducible data analyses.
pytask reproducible-research scientific-workflows
Last synced: 03 Aug 2024
https://github.com/ropensci/git2rdata
An R package for storing and retrieving data.frames in git repositories.
r r-package reproducible-research rstats version-control
Last synced: 13 Aug 2024
https://github.com/fmalmeida/bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
annotation antimicrobial-genes-annotation barrnap genome-analysis genome-browser genomic-islands-prediction insertion-sequences ko-annotation methylation-annotation mobile-genetic-elements nextflow phigaro pipeline prophage-sequences-prediction prophages reproducible-research rgi rrna-prediction virulence-factor virulence-genes
Last synced: 02 Aug 2024
https://github.com/AthenaEPI/dmipy
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
axcaliber ball-and-racket ball-and-stick constrained-spherical-deconvolution diffusion-mri diffusion-time-dependence microscopic-diffusion-imaging microstructure-estimation microstructure-imaging-in-crossings multi-compartment-modeling multi-echo-time multi-shell multi-tissue-csd neuroimaging neuroscience noddi noddi-bingham optimization reproducible-research spherical-mean-technique
Last synced: 02 Aug 2024
https://github.com/wlandau/targets-tutorial
Short course on the targets R package
data-science make pipeline r r-package reproducibility reproducible-research rstats targets workflow
Last synced: 13 Aug 2024
https://github.com/ypares/porcupine
Express parametrable, composable and portable data pipelines
analytics haskell reproducible-research workflows
Last synced: 28 Sep 2024
https://github.com/ropensci/gittargets
Data version control for reproducible analysis pipelines in R with {targets}.
data-science data-version-control data-versioning r r-package reproducibility reproducible-research rstats targets workflow
Last synced: 30 Sep 2024
https://github.com/CredibilityLab/groundhog
Reproducible R Scripts Via Date Controlled Installing & Loading of CRAN & Git Packages
cran r r-package reproducible-research rstats
Last synced: 13 Aug 2024
https://github.com/gesistsa/rang
🐶 (Re)constructing R computational environments
cran r reproducibility reproducible-research rstats
Last synced: 13 Aug 2024
https://github.com/ctuning/ck-env
CK repository with components and automation actions to enable portable workflows across diverse platforms including Linux, Windows, MacOS and Android. It includes software detection plugins and meta packages (code, data sets, models, scripts, etc) with the possibility of multiple versions to co-exist in a user or system environment.
android codereef collective-knowledge compilers datasets hpc libraries linux macos mobile-devices models multiple-versions package-manager portable-workflows python reproducible-research research-workflows tools windows
Last synced: 04 Aug 2024
https://github.com/parklab/nozzle
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
gehlenborglab html-report reproducible-research
Last synced: 13 Aug 2024
https://github.com/markvanderloo/lumberjack
Track changes in data with ease
daff datascience logging r reproducible-research
Last synced: 13 Aug 2024
https://github.com/wlandau/targets-shiny
Example Shiny app containing a targets pipeline.
high-performance-computing make pipeline r reproducibility reproducible-research shiny targets workflow
Last synced: 13 Aug 2024
https://github.com/nuest/ten-simple-rules-dockerfiles
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
containerisation containerization dockerfiles open-science reproducible-paper reproducible-research reproducible-science ten-simple-rules
Last synced: 13 Aug 2024
https://github.com/wlandau/targets-minimal
A minimal example data analysis project with the targets R package
data-science high-performance-computing pipeline r reproducibility reproducible-research rstats statistics targets workflow
Last synced: 05 Aug 2024
https://github.com/wlandau/drake-examples
Example workflows for the drake R package
data-science drake high-performance-computing makefile pipeline r reproducibility reproducible-research ropensci rstats workflow
Last synced: 05 Aug 2024
https://github.com/ropensci-books/drake
The user manual for the drake R package
data-science drake high-performance-computing makefile pipeline r reproducibility reproducible-research ropensci rstats workflow
Last synced: 02 Aug 2024
https://github.com/AllenInstitute/openscope_databook
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
dandi-archive data-analysis data-visualization nwb python reproducible-research visualization
Last synced: 02 Aug 2024
https://github.com/baumer-lab/fertile
creating optimal conditions for reproducibility
r reproducibility reproducible-research tidyverse workflow
Last synced: 13 Aug 2024
https://github.com/ctuning/ctuning-programs
Collective Knowledge extension with unified and customizable benchmarks (with extensible JSON meta information) to be easily integrated with customizable and portable Collective Knowledge workflows. You can easily compile and run these benchmarks using different compilers, environments, hardware and OS (Linux, MacOS, Windows, Android). More info:
c collaborative-benchmarking collaborative-optimization collective-knowledge common-benchmarks cpp crowd-benchmarking crowd-tuning cuda customizable-benchmarking fortran json-api json-metadata open-benchmarks opencl reproducible-research reproducible-workflows
Last synced: 02 Aug 2024
https://github.com/reprohack/reprohack-hq
ReproHack Headquarters
hackathon reproducible-research reresearch-code-review
Last synced: 13 Aug 2024
https://github.com/genepattern/genepattern-notebook
Platform for integrating genomic analysis with Jupyter Notebooks.
bioinformatics genepattern jupyter nbextension python reproducible-research
Last synced: 30 Sep 2024
https://github.com/rostools/prodigenr
Project directory generator R package
cran devtools open-science open-source project-management reproducibility reproducible-research reproducible-science rstats rstudio usethis
Last synced: 13 Aug 2024
https://github.com/PredictiveEcology/reproducible
A set of tools for R that enhance reproducibility beyond package management
r-package reproducibility reproducible-research
Last synced: 01 Aug 2024
https://github.com/danieldeutsch/repro
Repro is a library for easily running code from published papers via Docker.
docker machine-learning nlp reproducibility reproducible-research
Last synced: 01 Aug 2024
https://github.com/hakyimlab/ukbrest
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
biobank reproducibility reproducible-research reproducible-science uk-biobank
Last synced: 01 Aug 2024
https://github.com/FRBCesab/rcompendium
:package: Create a package or compendium structure
package r reproducible-research research-compendium
Last synced: 13 Aug 2024
https://github.com/data-datum/learning_R
List of resources for learning R
books data-manipulation data-visualization datatable dplyr functions ggplot2 purrr r r-programming r-spatial reproducible-research rmarkdown rstudio shiny shiny-apps strings strings-manipulation tidyr webinars
Last synced: 13 Aug 2024
https://github.com/ropensci/daiquiri
Data quality reporting for temporal datasets.
data-quality initial-data-analysis r r-package reproducible-research rstats temporal-data time-series
Last synced: 13 Aug 2024
https://github.com/leeper/make-example
An example of using make for a data analysis project
data-analysis make manuscript reproducible-research
Last synced: 05 Aug 2024
https://github.com/beyondtheclouds/enos
Experimental eNvironment for OpenStack :monkey:
chameleon docker grid5000 kolla-ansible openstack reproducible-research vagrant virtualbox
Last synced: 02 Oct 2024
https://github.com/fmalmeida/ngs-preprocess
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
bax2bam bioinformatics illumina nanopack nextflow ngs ngs-preprocess pacbio pacbio-ccs pipeline porechop reproducible-research reproducible-science trimgalore workflow
Last synced: 02 Aug 2024
https://github.com/braph-software/BRAPH-2
BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.
biomedical-engineering brain-connectivity-analysis brain-research computational-neuroscience connectomics data-analysis data-science data-visualization deep-learning graph-theory machine-learning matlab network-analysis neuroimaging neuroscience open-source reproducible-research research-tools scientific-software toolbox
Last synced: 02 Aug 2024
https://github.com/hofnerb/papeR
A toolbox for writing Sweave or other LaTeX-based papers and reports and to prettify the output of various estimated models.
cran knitr latex r-language r-package reporting reproducible reproducible-research sweave
Last synced: 13 Aug 2024
https://github.com/sgibson91/binderhub-deploy
Deploy a BinderHub from scratch on Microsoft Azure
azure binder binderhub cloud docker hut23 reproducibility reproducible-research
Last synced: 13 Aug 2024
https://github.com/benmarwick/researchcompendium
NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach
compendium reproducibility reproducible-research reproducible-science
Last synced: 05 Aug 2024
https://github.com/jpgmv1998/reproducible_paper_template
Template repository for starting a new empirical paper project implementing good practices for reproducibility using R
economics empirical-research reproducible-research template
Last synced: 02 Aug 2024
https://github.com/openplantpathology/Reproducibility_in_Plant_Pathology
A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathology research reproducibility and suggestions for ways to improving it.
open-science plant-pathology r reproducible-research reproducible-science research-compendium rstats
Last synced: 03 Aug 2024
